View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6544_high_3 (Length: 500)
Name: NF6544_high_3
Description: NF6544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6544_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 5 - 447
Target Start/End: Original strand, 34349294 - 34349735
Alignment:
| Q |
5 |
tgtcgaagaaaatagtaaaacaaatcaaataaagcaagaaagctctcacacaccactgtatcagattatttccctcattctcccactaagttgccatatt |
104 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34349294 |
tgtcgatgaatatagtaaaacaaatcaaataaagcaagaaagctctcacacaccattgtatcggattatttccctcattctcccactaagttgccatatt |
34349393 |
T |
|
| Q |
105 |
gaggtgctcctcacgtattctctttaggaagggaatatttgaaaaagcaccaaactagttagctctctcatcaatcgcagtatgctcgacaacaccaaac |
204 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34349394 |
gaggtgctcctcgcgtattctctttaggaagggaatatttgaaaaagcaccaaactagttagctctctcatcaatcgcagtatgctcgacaacaccaaac |
34349493 |
T |
|
| Q |
205 |
aagtcaatcatcaactggatacccgtctcctgagagannnnnnnnctcgtgatccatcattttcccttcaacggggatgtataaaagacacgtcaaatca |
304 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34349494 |
aagtcaatcgtcaactggatacccgtctcctgagaga-tctttttctcgtgatccatcattttcccttcaacggggatgtataaaagacacgtcaaatca |
34349592 |
T |
|
| Q |
305 |
tccagcgtagcggtcatctccacaacaggcagttgaaagtcgatatcttatcccaaatcctgcatatgtgctgatgggtgtaaaagtgtggttatcttat |
404 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34349593 |
tccagcgtagcggtcatctccacaacaggcagatgaaagtcgttatcttatcccaaatcctgcatatgtgctgatgggtgtaaaagtgtggttatcttat |
34349692 |
T |
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| Q |
405 |
tcacatgcttgatggccttacacacattgcgactttcaaatac |
447 |
Q |
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| T |
34349693 |
tcacatgcttgatggccttacacacattgcgactttcaaatac |
34349735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 80 - 202
Target Start/End: Complemental strand, 16782424 - 16782302
Alignment:
| Q |
80 |
cattctcccactaagttgccatattgaggtgctcctcacgtattctctttaggaagggaatatttgaaaaagcaccaaactagttagctctctcatcaat |
179 |
Q |
| |
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|||||||| ||| |||| |||||||||||||||| ||| ||||| |||||||| ||||||||| |||| | ||||||| || | | | ||||||||| |
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| T |
16782424 |
cattctccaactgagtttccatattgaggtgctcgtcatatattccctttaggagtggaatatttataaaatccccaaactggtgatcacactcatcaat |
16782325 |
T |
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| Q |
180 |
cgcagtatgctcgacaacaccaa |
202 |
Q |
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| T |
16782324 |
tgcacgatgctcgacaacaccaa |
16782302 |
T |
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