View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6544_high_6 (Length: 416)
Name: NF6544_high_6
Description: NF6544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6544_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 37 - 246
Target Start/End: Original strand, 14596838 - 14597047
Alignment:
| Q |
37 |
cagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttacacaatatacaga |
136 |
Q |
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| T |
14596838 |
cagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggtgcagatccacgaaatgcatctcgcttggttacacaatatacaga |
14596937 |
T |
|
| Q |
137 |
acgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttca |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14596938 |
acgccatccacgattgtgcatgcggtaccctgtaaccacatcctctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttca |
14597037 |
T |
|
| Q |
237 |
tacctacatg |
246 |
Q |
| |
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|||||||||| |
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| T |
14597038 |
tacctacatg |
14597047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 37 - 246
Target Start/End: Complemental strand, 14611732 - 14611523
Alignment:
| Q |
37 |
cagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttacacaatatacaga |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||| |
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| T |
14611732 |
cagaacctgtggcccatcttagcacctggtgtagtcgatcagtaaggttaattggtgctgatccgcgaaatgcatctcgcttggtcacgcaatatacaga |
14611633 |
T |
|
| Q |
137 |
acgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttca |
236 |
Q |
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|||||||||||| |||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
14611632 |
acgccatccacggttgtgcatgcggtaacctgtaacgacgtcctctgtcactgatccataaatccatcccactctgtctccccattctgtcttctcttcg |
14611533 |
T |
|
| Q |
237 |
tacctacatg |
246 |
Q |
| |
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|||||||||| |
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| T |
14611532 |
tacctacatg |
14611523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 297 - 411
Target Start/End: Original strand, 14597098 - 14597212
Alignment:
| Q |
297 |
gttgtcttttcatatataatattgtatataagtacaaaaatattttttatgacttatatgtttgtgtttgacaaagtatacataccaacaagaaatgaca |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14597098 |
gttgtcttttcatatataatattgtatataagtacaaaaatattttttatgacttatatgtttgtgtttgacaaagtatacataccaacaagaaatgaca |
14597197 |
T |
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| Q |
397 |
gacacaggttctgct |
411 |
Q |
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||||||| ||||||| |
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| T |
14597198 |
gacacagattctgct |
14597212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 241
Target Start/End: Original strand, 15417057 - 15417259
Alignment:
| Q |
39 |
gaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttacacaatatacagaac |
138 |
Q |
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|||||||| ||||||||||| || ||||||| ||||| || ||||| || ||||||| |||||| || || |||| || || | ||||||| || | |
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| T |
15417057 |
gaacctgttgcccatcttagaacttggtgtaaacgatcggtgagatttataggtgctgttccacggaaagcgtctctttttgtgatgcaatatatcgatc |
15417156 |
T |
|
| Q |
139 |
gccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttcata |
238 |
Q |
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||||||||| |||||||| | ||| || || || || |||||||||||||| ||||||||||| || | ||| |||||||||||||| || || ||||| |
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| T |
15417157 |
tccatccacggttgtgcattctgtaaccagttacaacatcttctgtcactgatccataaatccaacctattctatctccccattctgttttatcctcata |
15417256 |
T |
|
| Q |
239 |
cct |
241 |
Q |
| |
|
||| |
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|
| T |
15417257 |
cct |
15417259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 240
Target Start/End: Original strand, 12192718 - 12192859
Alignment:
| Q |
99 |
ccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaa |
198 |
Q |
| |
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||||| || ||||| | |||||| |||||||| ||||| | |||||| | ||||||||| | || ||||| || || || || || || ||||| |||| |
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| T |
12192718 |
ccacggaaggcatccctcttggtcacacaatacacagacctccatcctctattgtgcattctataacctgtcacaacatcctcggttaccgacccgtaaa |
12192817 |
T |
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| Q |
199 |
tccatcccactctttctccccattctgtcttgtcttcatacc |
240 |
Q |
| |
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||||||| ||||| ||||||||||| ||||| |||||||||| |
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| T |
12192818 |
tccatccaactctatctccccattcggtcttatcttcatacc |
12192859 |
T |
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