View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6544_low_1 (Length: 801)

Name: NF6544_low_1
Description: NF6544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6544_low_1
NF6544_low_1
[»] chr1 (5 HSPs)
chr1 (8-778)||(4410601-4411373)
chr1 (705-776)||(4327574-4327645)
chr1 (689-781)||(48635169-48635260)
chr1 (687-762)||(42423183-42423258)
chr1 (681-739)||(441649-441707)
[»] chr8 (3 HSPs)
chr8 (694-762)||(35775218-35775286)
chr8 (687-778)||(8252812-8252903)
chr8 (690-762)||(7624591-7624663)
[»] chr4 (5 HSPs)
chr4 (687-731)||(51093272-51093316)
chr4 (689-740)||(19067434-19067485)
chr4 (690-756)||(22887822-22887888)
chr4 (690-756)||(22939486-22939552)
chr4 (687-781)||(41058935-41059029)
[»] chr2 (5 HSPs)
chr2 (681-781)||(4908798-4908898)
chr2 (687-781)||(4119404-4119498)
chr2 (687-781)||(11510968-11511061)
chr2 (683-741)||(6989789-6989847)
chr2 (687-728)||(6767689-6767730)
[»] chr7 (1 HSPs)
chr7 (687-781)||(21435975-21436070)
[»] chr3 (8 HSPs)
chr3 (689-780)||(35951047-35951138)
chr3 (703-778)||(40339257-40339331)
chr3 (681-779)||(30958044-30958142)
chr3 (681-779)||(30973856-30973954)
chr3 (691-781)||(51667153-51667243)
chr3 (699-739)||(42534464-42534504)
chr3 (712-759)||(44375518-44375564)
chr3 (689-730)||(23187691-23187732)
[»] chr6 (3 HSPs)
chr6 (710-778)||(26492568-26492636)
chr6 (703-782)||(25208656-25208735)
chr6 (699-732)||(7263099-7263132)
[»] chr5 (1 HSPs)
chr5 (687-741)||(10859855-10859909)


Alignment Details
Target: chr1 (Bit Score: 718; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 718; E-Value: 0
Query Start/End: Original strand, 8 - 778
Target Start/End: Original strand, 4410601 - 4411373
Alignment:
Q  8 atcatcaaatgttgctaacttaacgaatctcgcttatagttcctcgaattgtagcaatgagctttcactaagtcttgcaacatctccaacttcaggtcaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4410601 atcatcaaatgttgctaacttaacgaatctcgcttatagttcctcgaattgtagcaatgagctttcactaagtcttgcaacatctccaacttcagttcaa 4410700  T
Q  108 tgctcagagattagttgttcagacttaactcatagcatgaatggaacaagatcaggtttggaacaagcctcatgtagtagtatggaactttctatgagtt 207  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4410701 tgctcagagattagttgttctgacttaactcatagcatgaatggaacaagatcaggtttggaacaagcctcatgtagtagtatggaactttctatgagtt 4410800  T
Q  208 tagggaatgataaacatgtcaagttttcgcctgcaatattaggatcaagataccttgctgtaattcaggaaatacttgttcaaattgcaacattttcatt 307  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4410801 tagggaatgataaacatgtcaagttttcgcccgcaatattaggatcaagataccttgctgtaattcaggaaatacttgttcaaattgcaacattttcatt 4410900  T
Q  308 tgaaaatcttgatgagataaactattccggttctggtgttagaggccgaggaaataaatcaacttcgttgaacacagccaagcgaaggataggaataaat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||    
T  4410901 tgaaaatcttgatgagataaactattccggttctggtgttagaggccgaggaaataaatcaacttcgtcaaacacaaccaagcgaaggataggaataaat 4411000  T
Q  408 cgcgacgagagtcctatgtcagaagcttatgctgattcttcattgcaaaggcatgctgttgaatcaaagcaatctcaactcttgatgcttatacagatgg 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4411001 cgcgacgagagtcctatgtcagaagcttatgctgattcttcattgcaaaggcatgctgttgaatcaaagcaatctcaactcttgatgcttctacagatgg 4411100  T
Q  508 tacattgctaaccacttagattacattacattcatttggttttcgtaaaaccgtttacggtcaagattgccttagtatatgtctgctggtttcactcttg 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||| |||||||||||||||||||||||||||||    
T  4411101 tacattgctaaccacttagattacattacattcatttggttttcgtaaaaccgtttatggtcctgattgcgttagtatatgtctgctggtttcactcttg 4411200  T
Q  608 aacatggaaaaaattgatttctgatgtgtagaacggattttgacatctttggatgttttctagtagagttggtacttagagctagaattttgagcttttg 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4411201 aacatggaaaaaattgatttctgatgtgtagaacggattttgacatctttggatgttttctagtagagttggtacttagagctagaattttgagcttttg 4411300  T
Q  708 cctctacaattgatttttagccttgaatttattgctcaatcaacttttacat--gaatctatcgaaacataaa 778  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  4411301 cctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgagaatctatcgaaacataaa 4411373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 705 - 776
Target Start/End: Complemental strand, 4327645 - 4327574
Alignment:
Q  705 ttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacata 776  Q
    |||||||||||||||||||||| |||||||||||||| |||| | ||| |||||||||| |||  |||||||    
T  4327645 ttgcctctacaattgatttttatccttgaatttattgttcaagccactattacatgaatatattcaaacata 4327574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 689 - 781
Target Start/End: Complemental strand, 48635260 - 48635169
Alignment:
Q  689 ctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatca 781  Q
    |||||||||  |||||||| ||||| |||||||||||| | |||||||||| | | || | || ||||||||||| |||| ||||||||||||    
T  48635260 ctagaatttgaagcttttgtctctataattgatttttaccattgaatttatcgttaaacccac-tttacatgaatgtatccaaacataaatca 48635169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 687 - 762
Target Start/End: Complemental strand, 42423258 - 42423183
Alignment:
Q  687 agctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaa 762  Q
    ||||||||||| ||||||||| ||||| |||||| ||||||| |  ||||||||| |||| | |||||||| ||||    
T  42423258 agctagaatttagagcttttgtctctaaaattgaattttagcttcaaatttattggtcaacccacttttacgtgaa 42423183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 681 - 739
Target Start/End: Complemental strand, 441707 - 441649
Alignment:
Q  681 acttagagctagaattttgagcttttgcctctacaattgatttttagccttgaatttat 739  Q
    ||||| |||||||||||  || ||| || |||||||||||||||||| |||||||||||    
T  441707 acttaaagctagaatttatagttttggcttctacaattgatttttagacttgaatttat 441649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 694 - 762
Target Start/End: Original strand, 35775218 - 35775286
Alignment:
Q  694 attttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaa 762  Q
    |||| ||||||||| |||||||||||||||||||||||||||| |||| |||||| |||||||||||||    
T  35775218 atttggagcttttgtctctacaattgatttttagccttgaattcattgttcaatccacttttacatgaa 35775286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 687 - 778
Target Start/End: Original strand, 8252812 - 8252903
Alignment:
Q  687 agctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaa 778  Q
    ||||| ||||| |||| ||||||||| || ||||| ||| |||||||||||| || |||| | ||||||||||| || |||| |||||||||    
T  8252812 agctacaatttggagcgtttgcctcttcatttgatgttttgccttgaatttactgttcaacccacttttacatgcatgtatctaaacataaa 8252903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 690 - 762
Target Start/End: Complemental strand, 7624663 - 7624591
Alignment:
Q  690 tagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaa 762  Q
    ||||| || ||||||||| |||||||||||| |||| |||||||| |||||| |||||  |||||||| ||||    
T  7624663 tagaagttggagcttttggctctacaattgacttttggccttgaaattattgttcaatttacttttacttgaa 7624591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 687 - 731
Target Start/End: Original strand, 51093272 - 51093316
Alignment:
Q  687 agctagaattttgagcttttgcctctacaattgatttttagcctt 731  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  51093272 agctagaatttggagcttttgcctctacaattgatttttagcctt 51093316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 740
Target Start/End: Original strand, 19067434 - 19067485
Alignment:
Q  689 ctagaattttgagcttttgcctctacaattgatttttagccttgaatttatt 740  Q
    |||||||||  |||||||| |||||||||||||| ||||||| |||||||||    
T  19067434 ctagaatttgaagcttttgtctctacaattgattattagcctcgaatttatt 19067485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 690 - 756
Target Start/End: Complemental strand, 22887888 - 22887822
Alignment:
Q  690 tagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaactttta 756  Q
    |||||||| |||||||| |||||| ||||| ||||||  ||||||||||||| ||||  ||||||||    
T  22887888 tagaatttagagcttttccctctaaaattggtttttactcttgaatttattgttcaaataactttta 22887822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 690 - 756
Target Start/End: Complemental strand, 22939552 - 22939486
Alignment:
Q  690 tagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaactttta 756  Q
    |||||||| |||||||| |||||| ||||| ||||||  ||||||||||||| ||||  ||||||||    
T  22939552 tagaatttagagcttttccctctaaaattggtttttactcttgaatttattgttcaaataactttta 22939486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 687 - 781
Target Start/End: Original strand, 41058935 - 41059029
Alignment:
Q  687 agctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatca 781  Q
    ||||| ||||| ||| |||||||||||||||||| ||||| | || |||| |||| |||| | ||||||| || ||| ||||  |||||||||||    
T  41058935 agctaaaatttcgagtttttgcctctacaattgacttttaactttaaattgattgttcaacccacttttatataaatgtatctgaacataaatca 41059029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 681 - 781
Target Start/End: Original strand, 4908798 - 4908898
Alignment:
Q  681 acttagagctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatc 780  Q
    ||||| ||||| |||||  || ||| || ||||||||||||||| |||||| | ||||||| |||||| ||||| |||||||| |||| |||||||||||    
T  4908798 acttaaagctaaaatttgtagatttggcttctacaattgattttcagccttaactttattgttcaatccactttaacatgaatgtatccaaacataaatc 4908897  T
Q  781 a 781  Q
    |    
T  4908898 a 4908898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 687 - 781
Target Start/End: Complemental strand, 4119498 - 4119404
Alignment:
Q  687 agctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatca 781  Q
    |||||||||||  |||||||||| ||| |||||| |||||||| ||||| ||||| |||||  ||  |||||||||| |||  ||||||||||||    
T  4119498 agctagaatttgaagcttttgccgctataattgacttttagccatgaatgtattgatcaattcacgcttacatgaatgtattcaaacataaatca 4119404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 687 - 781
Target Start/End: Original strand, 11510968 - 11511061
Alignment:
Q  687 agctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatca 781  Q
    ||||||||||| ||| |||||||||||||||| | ||||| |||  ||||||||| |||| | ||||||| |||||| || | ||||||||||||    
T  11510968 agctagaatttggagtttttgcctctacaattta-ttttaacctcaaatttattgttcaacccacttttatatgaatgtagctaaacataaatca 11511061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 683 - 741
Target Start/End: Complemental strand, 6989847 - 6989789
Alignment:
Q  683 ttagagctagaattttgagcttttgcctctacaattgatttttagccttgaatttattg 741  Q
    ||||||||||||||| | | ||||| |||||||||||||||| |  |||||||||||||    
T  6989847 ttagagctagaatttagtgtttttgactctacaattgattttcaatcttgaatttattg 6989789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 687 - 728
Target Start/End: Original strand, 6767689 - 6767730
Alignment:
Q  687 agctagaattttgagcttttgcctctacaattgatttttagc 728  Q
    ||||||||||| |||||||||| ||||||||||| |||||||    
T  6767689 agctagaatttggagcttttgcttctacaattgaattttagc 6767730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 687 - 781
Target Start/End: Complemental strand, 21436070 - 21435975
Alignment:
Q  687 agctagaattttg-agcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatca 781  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||  ||||| |||||| |||||| |||||| ||||||   ||| ||||||||||||    
T  21436070 agctagaattttggagcttttgcctctaccattgaattttaggtttgaagttattgttcaatccacttttccatgaaggcatccaaacataaatca 21435975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 689 - 780
Target Start/End: Original strand, 35951047 - 35951138
Alignment:
Q  689 ctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatc 780  Q
    ||||||||||| ||||||||| |||||||||| |||| || |||||||| ||| |||| | ||| ||| | |||| |||| |||||||||||    
T  35951047 ctagaattttgcgcttttgcccctacaattgagttttggcattgaattttttgttcaagccactattatacgaatgtatctaaacataaatc 35951138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 703 - 778
Target Start/End: Original strand, 40339257 - 40339331
Alignment:
Q  703 ttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaa 778  Q
    |||||| ||||||||||||||| |||||||||||||||| |||||  |||||||| | ||| |||| |||||||||    
T  40339257 ttttgcttctacaattgatttt-agccttgaatttattgttcaattcacttttacctaaatatatccaaacataaa 40339331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 681 - 779
Target Start/End: Original strand, 30958044 - 30958142
Alignment:
Q  681 acttagagctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaat 779  Q
    ||||| |||| | |||| |||||||||  ||||||| ||| ||||| |||| || |||||| |||||  |||||||||||||| |||| ||||||||||    
T  30958044 acttaaagctgggatttagagcttttgtttctacaagtgacttttaacctttaaattattgttcaattcacttttacatgaatatatccaaacataaat 30958142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 681 - 779
Target Start/End: Original strand, 30973856 - 30973954
Alignment:
Q  681 acttagagctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaat 779  Q
    ||||| |||| | |||| |||||||||  ||||||| ||| ||||| |||| || |||||| |||||  |||||||||||||| |||| ||||||||||    
T  30973856 acttaaagctgggatttagagcttttgtttctacaagtgacttttaacctttaaattattgttcaattcacttttacatgaatatatccaaacataaat 30973954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 691 - 781
Target Start/End: Original strand, 51667153 - 51667243
Alignment:
Q  691 agaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatca 781  Q
    ||||||| ||| ||||||  |||  |||||| || |||||||||||||||| ||||   ||||||||||||||||| | ||||||||||||    
T  51667153 agaatttggagtttttgcaactatgattgatattcagccttgaatttattgttcaacgcacttttacatgaatctacccaaacataaatca 51667243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 699 - 739
Target Start/End: Original strand, 42534464 - 42534504
Alignment:
Q  699 gagcttttgcctctacaattgatttttagccttgaatttat 739  Q
    ||||||||||||||||||||| ||||||||||| |||||||    
T  42534464 gagcttttgcctctacaattgttttttagccttaaatttat 42534504  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 712 - 759
Target Start/End: Complemental strand, 44375564 - 44375518
Alignment:
Q  712 tacaattgatttttagccttgaatttattgctcaatcaacttttacat 759  Q
    |||||||||||||||||||| ||||||||| |||||| ||||||||||    
T  44375564 tacaattgatttttagccttaaatttattgttcaatc-acttttacat 44375518  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 730
Target Start/End: Original strand, 23187691 - 23187732
Alignment:
Q  689 ctagaattttgagcttttgcctctacaattgatttttagcct 730  Q
    |||||||||| || |||| |||||||||||||||||||||||    
T  23187691 ctagaattttaaggttttacctctacaattgatttttagcct 23187732  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 710 - 778
Target Start/End: Original strand, 26492568 - 26492636
Alignment:
Q  710 tctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaa 778  Q
    ||||||||||||||||||||| |||| ||||| |||||| || | ||||| ||| |||| |||||||||    
T  26492568 tctacaattgatttttagcctcgaatatattgttcaatccacgtatacataaatatatccaaacataaa 26492636  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 703 - 782
Target Start/End: Original strand, 25208656 - 25208735
Alignment:
Q  703 ttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatcat 782  Q
    ||||| ||||||| |||||| |||| || |||| |||   | |||| |||||||||| ||||||||||||||||||||||    
T  25208656 ttttgtctctacagttgattattagactcgaatatatcatttaatccacttttacataaatctatcgaaacataaatcat 25208735  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 699 - 732
Target Start/End: Original strand, 7263099 - 7263132
Alignment:
Q  699 gagcttttgcctctacaattgatttttagccttg 732  Q
    |||||||||| |||||||||||||||||||||||    
T  7263099 gagcttttgcttctacaattgatttttagccttg 7263132  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 687 - 741
Target Start/End: Complemental strand, 10859909 - 10859855
Alignment:
Q  687 agctagaattttgagcttttgcctctacaattgatttttagccttgaatttattg 741  Q
    ||||||||||| ||||||||||||| ||| |||||||||| |||  |||||||||    
T  10859909 agctagaatttggagcttttgcctcaacatttgatttttaacctcaaatttattg 10859855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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