View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6544_low_10 (Length: 322)
Name: NF6544_low_10
Description: NF6544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6544_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 41955706 - 41955414
Alignment:
| Q |
13 |
atactagtctgtttggtatagattccaacaaaagcaaattttccaatgcactttttatcaaaggaacaatagtgtgttagattcggtcaacgtttcgttt |
112 |
Q |
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| T |
41955706 |
atactagtctgtttggtatagattccaacaaaagcaaattttccaatgcactttttatcaaaggaacaatagtgtgttagattcggtcaacgtttcgttt |
41955607 |
T |
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| Q |
113 |
gatcttcttatacaaaacaagaaagcatgaaacaaacttttccaaaaccatggcacaagtggttaatgggcgagaaattatttggttagaaaaatattta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41955606 |
gatcttcttatacaaaacaagaaagcatgaaacaaacttttccaaaaccatggcacaagtggttaatgggcgagaaattatttggtcagaaaaatattta |
41955507 |
T |
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| Q |
213 |
gtcggaatcttcttacctcatgattcatgaatcactattgaactctgaataaataagatctcttttcttagaaattggtgtgttacgatattt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41955506 |
gtcggaatcttcttacctcatgattcatgaatcactattgaactctgaataaataagatctcttttcttagaaattggtgtgttaagatattt |
41955414 |
T |
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