View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6544_low_11 (Length: 292)
Name: NF6544_low_11
Description: NF6544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6544_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 35381646 - 35381383
Alignment:
| Q |
13 |
aatattacaaagaaggaaatcaagcgggtatattacgttggtaatcactaaatcattctccatggagaatacaaaatttgaaatgataaatgaaagagag |
112 |
Q |
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| T |
35381646 |
aatactacaaagaaggaaatcaagcgggtatattacgttggtaatcactaaatcattctccatggagaatacaaaatttgaaatgataaatgaaagagag |
35381547 |
T |
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| Q |
113 |
agaaaaatacttgtgttttgaatcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatcca |
212 |
Q |
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| T |
35381546 |
aaaaaaatacttgtgttttgaatcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatcca |
35381447 |
T |
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| Q |
213 |
tgtcataagcatatagcacattgtaaagggccacattaaatataggtaccatttagatgtttga |
276 |
Q |
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| T |
35381446 |
tgtcataagcatatagcacattgtaaagggccacattaaatataggtaccatttagatgtttga |
35381383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 42 - 276
Target Start/End: Complemental strand, 35355608 - 35355369
Alignment:
| Q |
42 |
atattacgttggtaatcactaaatcattctccatggagaatacaaaatttgaaa--tgataaatga-aagag--agagaaaaatacttgtgttttgaatc |
136 |
Q |
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| T |
35355608 |
atattacattggtaatcactaaatcattctccaaggagaaaacaaaatctgaaaaatcacaaatgagaagaagaagaaaaaaatacctgtgttttaaatc |
35355509 |
T |
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| Q |
137 |
ttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcataagcatatagcacattgt |
236 |
Q |
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| T |
35355508 |
ttggtataatccaactttgtaacttaagatcattgaaggtgttgctttctaaaacaaaggcacgtccacaaatccaagtgataagcatagagaacattgt |
35355409 |
T |
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| Q |
237 |
aaagggccacattaaatataggtaccatttagatgtttga |
276 |
Q |
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| T |
35355408 |
aaatggccacattaagtgtagataccatttagatgtttga |
35355369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 119 - 276
Target Start/End: Complemental strand, 35370973 - 35370816
Alignment:
| Q |
119 |
atacttgtgttttgaatcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcat |
218 |
Q |
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|||||||| |||| |||||||||| |||||||||||| |||||||||| ||||| | |||||||||||| ||||| ||||||| || |||||| ||||| |
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| T |
35370973 |
atacttgtcttttaaatcttggtataagccaacattgcaacttgagattcttgaaggagttgctttctaaaacaaaggcacgtccacaaatccaagtcat |
35370874 |
T |
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| Q |
219 |
aagcatatagcacattgtaaagggccacattaaatataggtaccatttagatgtttga |
276 |
Q |
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| T |
35370873 |
aagcatagagaacattgtaaagggccacattaaatgtaggtaccatttagatgtttga |
35370816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 119 - 276
Target Start/End: Complemental strand, 19685518 - 19685361
Alignment:
| Q |
119 |
atacttgtgttttgaatcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcat |
218 |
Q |
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||||||||||||| |||||||||| ||||||||| || | ||||||||| ||||| | ||| |||||||| ||||| |||| || ||||||||| |||| |
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| T |
19685518 |
atacttgtgttttaaatcttggtataagccaacactgcagcttgagatctttgaaggagttactttctaaaacaaaggcacttccactaatccaagtcaa |
19685419 |
T |
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| Q |
219 |
aagcatatagcacattgtaaagggccacattaaatataggtaccatttagatgtttga |
276 |
Q |
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||||||| ||||||||||||| ||||||||||||| || |||||||| ||||||||| |
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| T |
19685418 |
aagcatagagcacattgtaaaaggccacattaaattgagataccatttcgatgtttga |
19685361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 119 - 276
Target Start/End: Original strand, 19629133 - 19629290
Alignment:
| Q |
119 |
atacttgtgttttgaatcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcat |
218 |
Q |
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|||||||| |||| |||||||||| ||||||||| || | ||||||||| ||||| ||| |||||||| |||| ||| | | ||||||||| |||| |
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| T |
19629133 |
atacttgtattttaaatcttggtataagccaacactgcagcttgagatctttgaagaagttactttctaaaacaatggcatgcccactaatccaagtcac |
19629232 |
T |
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| Q |
219 |
aagcatatagcacattgtaaagggccacattaaatataggtaccatttagatgtttga |
276 |
Q |
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||||||| |||||| |||||| ||||||||||||| || ||||||||||| |||||| |
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| T |
19629233 |
aagcatagagcacaatgtaaaaggccacattaaattgagataccatttagaagtttga |
19629290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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