View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6544_low_12 (Length: 289)
Name: NF6544_low_12
Description: NF6544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6544_low_12 |
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| [»] chr4 (2 HSPs) |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 289
Target Start/End: Original strand, 45645257 - 45645535
Alignment:
| Q |
11 |
tgattcacattcacaaggagatcttagttttgcaactcttacattggattccaccactggaagccctgtttcatttcctaaaactgtgataggatgtgga |
110 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45645257 |
tgattcacattcacaaggagatcttagtgttgaaactcttacattggattccaccactggaagccctgtttcatttcctaaaactgtgataggatgtgga |
45645356 |
T |
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| Q |
111 |
aatagcaatacggatcgttcggaggcgcagggctctggtatagtgggccttggaggtggaccagtgtctctaataacacatttgggatcatcaattggtg |
210 |
Q |
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|||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45645357 |
aataacaatacgggtcgtttggaggtgcagggctctggtatagtgggccttggaggtggaccagtgtctctaataacacaattgggatcatcaattggtg |
45645456 |
T |
|
| Q |
211 |
gtgaattctcttattgtttggtgccattggataacaaggagtcaaacacaacgagtaaactcagttttggagatgccgc |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45645457 |
gtgaattctcttattgtttggtgccattggataacaaggagtcaaacacaacgagtaaactcagttttggagatgccgc |
45645535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 1397720 - 1397809
Alignment:
| Q |
21 |
tcacaaggagatcttagttttgcaactcttacattggattccaccactggaagccctgtttcatttcctaaaactgtgataggatgtgga |
110 |
Q |
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|||||||||||||||||||| | |||||||||||| ||||||||| |||| || ||||||| ||||||||||||||||| |||||| |
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| T |
1397720 |
tcacaaggagatcttagtttagaaactcttacattagattccacctctggttcttctatttcattgcctaaaactgtgataggttgtgga |
1397809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 8e-67; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 34665758 - 34666033
Alignment:
| Q |
14 |
ttcacattcacaaggagatcttagttttgcaactcttacattggattccaccactggaagccctgtttcatttcctaaaactgtgataggatgtggaaat |
113 |
Q |
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||||||||||||||||||||||||| ||| |||||| ||||||| ||||||| |||||| |||||||||||||||||||| |||||||| ||||||| | |
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| T |
34665758 |
ttcacattcacaaggagatcttagtgttgatactctttcattggaatccaccagtggaagtcctgtttcatttcctaaaacagtgataggttgtggaact |
34665857 |
T |
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| Q |
114 |
agcaatacggat-cgttcggaggcgcagggctctggtatagtgggccttggaggtggaccagtgtctctaataacacatttgggatcatcaattggtggt |
212 |
Q |
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||| ||| |||| ||||| ||| | |||||||||||| ||||||||||| || || |||||||| |||||||| ||||||||||||||||||||| |
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| T |
34665858 |
gataatgcggggacgtttggaggtgcaag-ctctggtatagttggccttggaggcgggccggtgtctctcataacacaattgggatcatcaattggtggt |
34665956 |
T |
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| Q |
213 |
gaattctcttattgtttggtgccattggataacaaggagtcaaacacaacgagtaaactcagttttggagatgccgc |
289 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| || | |||| ||||||||||||||||||||| |
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| T |
34665957 |
aaattctcttattgtttggtgccattgttgaacaaggagtcaaacgcatcaagtatactcagttttggagatgccgc |
34666033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 34646064 - 34646339
Alignment:
| Q |
14 |
ttcacattcacaaggagatcttagttttgcaactcttacattggattccaccactggaagccctgtttcatttcctaaaactgtgataggatgtggaaat |
113 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||| ||||||| ||||||| ||||| ||||||||||||||||||| |||||||| ||||||| | |
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| T |
34646064 |
ttcacattcacaaggagatcttagtgttgatactctttcattggaatccaccagcggaagtcctgtttcatttcctaaaatagtgataggttgtggaact |
34646163 |
T |
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| Q |
114 |
agcaatacggat-cgttcggaggcgcagggctctggtatagtgggccttggaggtggaccagtgtctctaataacacatttgggatcatcaattggtggt |
212 |
Q |
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||| ||| |||| ||||||||| | |||||||||||| ||||||||||| || || |||||||| |||||||| ||||||||||||||||||||| |
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| T |
34646164 |
gataatgcggggacgtttggaggcgcaag-ctctggtatagttggccttggaggcgggccggtgtctctcataacacaattgggatcatcaattggtggt |
34646262 |
T |
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| Q |
213 |
gaattctcttattgtttggtgccattggataacaaggagtcaaacacaacgagtaaactcagttttggagatgccgc |
289 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||| || | |||| ||||||||||||||||||||| |
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| T |
34646263 |
aaattctcttattgtttggtgccattgttgaacaaggagtcaaacgcatcaagtatactcagttttggagatgccgc |
34646339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 19649476 - 19649385
Alignment:
| Q |
19 |
attcacaaggagatcttagttttgcaactcttacattggattccaccactggaagccctgtttcatttcctaaaactgtgataggatgtgga |
110 |
Q |
| |
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||||||||||||| |||||| ||| ||||||||||||||||||||||| || |||||||||||||||||||||| || ||||||||| |
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| T |
19649476 |
attcacaaggagaacttagtgttgagactcttacattggattccaccaccggtcattctgtttcatttcctaaaactgttatcggatgtgga |
19649385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 19649348 - 19649256
Alignment:
| Q |
147 |
ggtatagtgggccttggaggtggaccagtgtctctaataacacatttgggatcatcaattggtggtgaattctcttattgtttggtgccattg |
239 |
Q |
| |
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|||||||| || |||||| |||||| |||||||| | |||||| ||| ||| |||||||||||| |||| ||||| |||||| |||||||| |
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| T |
19649348 |
ggtatagttggtcttggaattggacctgtgtctcttacaacacaattgaaatcttcaattggtggtaaattttcttactgtttgttgccattg |
19649256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 34302723 - 34302942
Alignment:
| Q |
15 |
tcacattcacaaggagatcttagttttgcaactcttacattggattccaccactggaagccctgtttcatttcctaaaactgtgataggatgtggaaata |
114 |
Q |
| |
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|||||||||||||||||||||||| ||| |||||||||||||| || |||||||| | ||||||||||||||||||||||| ||||||||||||| || |
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| T |
34302723 |
tcacattcacaaggagatcttagtcttgagactcttacattggaatctaccactgggcgtcctgtttcatttcctaaaactgttataggatgtggaacta |
34302822 |
T |
|
| Q |
115 |
gcaata-cggatcgttcggaggcgcagggctctggtatagtgggccttggaggtggaccagtgtctctaataacacatttgggatcatcaattggtggtg |
213 |
Q |
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||||| || ||||| | ||| | |||||||| |||| ||||||||||||||||| | |||||||||||||| |||||| | |||||||||||| |
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| T |
34302823 |
acaatatagggtcgtttaaacgcgta-agctctggtgtagttggccttggaggtggacctgcatctctaataacacaattgggaccgtcaattggtggta |
34302921 |
T |
|
| Q |
214 |
aattctcttattgtttggtgc |
234 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
34302922 |
aattctcttattgtttggtgc |
34302942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 40717767 - 40717993
Alignment:
| Q |
13 |
attcacattcacaaggagatcttagttttgcaactcttacattggattccaccactggaagccctgtttcatttcctaaaactgtgataggatgtggaaa |
112 |
Q |
| |
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|||||||||||||||||||||||||| ||| ||||||||||| || ||| | ||||| | | | ||||||||||||||||||||||||||||||||| |
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| T |
40717767 |
attcacattcacaaggagatcttagtgttgatactcttacattagagtcctctactggtggtcatatttcatttcctaaaactgtgataggatgtggaac |
40717866 |
T |
|
| Q |
113 |
tagcaatac-ggatcgttcggaggcgcagggctctggtatagtgggccttggaggtggaccagtgtctctaataacacatttgggatcatcaattggtgg |
211 |
Q |
| |
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| |||||| | ||||| ||| ||| ||||||||||||| |||||||||||||| || |||||||| |||||||| | ||||| ||||||||| |
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| T |
40717867 |
caacaatacagtgtcgtttaaaggtgca-agctctggtatagttggccttggaggtggtcccgtgtctcttataacacaacttggatcgtcaattggttc |
40717965 |
T |
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| Q |
212 |
tgaattctcttattgtttggtgccattg |
239 |
Q |
| |
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||||||||||||||||| | |||||| |
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| T |
40717966 |
aaaattctcttattgtttgcttccattg |
40717993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 14183022 - 14183233
Alignment:
| Q |
25 |
aaggagatcttagttttgcaactcttacattggattccaccactggaagccctgtttcatttcctaaaactgtgataggatgtggaaatagcaatacgga |
124 |
Q |
| |
|
||||| |||||||| ||| ||||||||||| || ||| |||||||| ||| ||||||||||||||||||||||||||||||||| | |||||| | |
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| T |
14183022 |
aaggaaatcttagtgttgatactcttacattagagtcctccactggacatcctatttcatttcctaaaactgtgataggatgtggaactgacaatacagt |
14183121 |
T |
|
| Q |
125 |
-tcgttcggaggcgcagggctctggtatagtgggccttggaggtggaccagtgtctctaataacacatttgggatcatcaattggtggtgaattctctta |
223 |
Q |
| |
|
|| || | ||| ||| | ||||||||||| ||||||||||||||||||| ||||| || ||||| |||||||||||||||| || |||||||||| |
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| T |
14183122 |
gtcatttgaaggtgcaagt-tctggtatagttggccttggaggtggaccagcatctcttattacacaattgggatcatcaattgatgcaaaattctctta |
14183220 |
T |
|
| Q |
224 |
ttgtttggtgcca |
236 |
Q |
| |
|
||||||| ||||| |
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| T |
14183221 |
ttgtttgttgcca |
14183233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 14191948 - 14192055
Alignment:
| Q |
13 |
attcacattcacaaggagatcttagttttgcaactcttacattggattccaccactggaagccctgtttcatttcctaaaactgtgataggatgtggaaa |
112 |
Q |
| |
|
||||||||||| ||||||||||||| ||| |||||||||||||| ||||||| |||| | |||||||||||||| | ||||||||||||||||| |
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| T |
14191948 |
attcacattcaggaggagatcttagtgttgacactcttacattggaatccaccaatggacttacagtttcatttcctaatattgtgataggatgtggaac |
14192047 |
T |
|
| Q |
113 |
tagcaata |
120 |
Q |
| |
|
|| ||||| |
|
|
| T |
14192048 |
taacaata |
14192055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 14200973 - 14201182
Alignment:
| Q |
20 |
ttcacaaggagatcttagttttgcaactcttacattggattccaccactggaagccctgtttcatttcctaaaactgtgataggatgtggaaatagcaat |
119 |
Q |
| |
|
|||||||||| |||||||| | | ||||||||||| ||||||||||| || | | ||||||||||||||||| |||||||||||||| |||| ||| |
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| T |
14200973 |
ttcacaaggatatcttagtgtggagactcttacattagattccaccaccggctactcagtttcatttcctaaaacaatgataggatgtggatatagaaat |
14201072 |
T |
|
| Q |
120 |
ac-ggatcgttcggaggcgcagggctctggtatagtgggccttggaggtggaccagtgtctctaataacacatttgggatcatcaattggtggtgaattc |
218 |
Q |
| |
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|| || |||| ||| || ||||||||||||| ||||||||| ||||||| ||||||| | | || ||||| ||||||||||||| ||||| |
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| T |
14201073 |
acagggacgtttcatggccca-agctctggtatagttggccttggaagtggacctatgtctcttccatctcaattgggtacatcaattggtggaaaattc |
14201171 |
T |
|
| Q |
219 |
tcttattgttt |
229 |
Q |
| |
|
||||||||||| |
|
|
| T |
14201172 |
tcttattgttt |
14201182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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