View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6544_low_14 (Length: 261)
Name: NF6544_low_14
Description: NF6544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6544_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 15 - 244
Target Start/End: Original strand, 24273443 - 24273666
Alignment:
| Q |
15 |
ctgtggtgacacttttttggatagttagactattgggttagtagtaaacnnnnnnnnnnnttagagatatggtaaatgagggaaaaagaaattttctaag |
114 |
Q |
| |
|
|||| |||||||| | ||||||||||||||||||||||||||||||||| |||| |||||||||||| | |||||||||||||||||||| |
|
|
| T |
24273443 |
ctgtagtgacactatcttggatagttagactattgggttagtagtaaacaacaa------ttagggatatggtaaatcatggaaaaagaaattttctaag |
24273536 |
T |
|
| Q |
115 |
aaaccagttagcagggatccgaaaccgattgatattttcaattattgtaaggagaaggggcattggaagcattattatcccaagaagaggtagatgcaac |
214 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24273537 |
aaaccagttagtagggatccgaaaccgattgatatttgcaattactgtaaggagaaggggcattggaagcatgattatcccaagaagaggtagatgcaac |
24273636 |
T |
|
| Q |
215 |
aagagaaggtgccgtgtaatgtcgttgttg |
244 |
Q |
| |
|
||||||||| ||||||||||||||||||| |
|
|
| T |
24273637 |
aagagaaggcaccgtgtaatgtcgttgttg |
24273666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 248
Target Start/End: Complemental strand, 13419394 - 13419221
Alignment:
| Q |
75 |
ttagagatatggtaaatgagggaaaaagaaattttctaagaaaccagttagcagggatccgaaaccgattgatattttcaattattgtaaggagaagggg |
174 |
Q |
| |
|
|||| |||||||||||| ||| |||||||| || ||||||||||| | || |||| || |||| ||| | |||||| |||||| ||||| ||||||| | |
|
|
| T |
13419394 |
ttagggatatggtaaatcaggaaaaaagaagttgactaagaaaccaatcagtaggggtctgaaatcgactaatatttgcaattactgtaaagagaaggag |
13419295 |
T |
|
| Q |
175 |
cattggaagcattattatcccaagaagaggtagatgcaacaagagaaggtgccgtgtaatgtcgttgttgctga |
248 |
Q |
| |
|
|||| |||| || ||| ||||||||||||| ||||||||| ||||||| | |||| ||||||||||||||| |
|
|
| T |
13419294 |
cattagaagaatgattgtcccaagaagaggctaatgcaacaacagaaggtatcatgtattgtcgttgttgctga |
13419221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 202
Target Start/End: Original strand, 30047078 - 30047200
Alignment:
| Q |
80 |
gatatggtaaatgagggaaaaagaaattttctaagaaaccagttagcagggatccgaaaccgattgatattttcaattattgtaaggagaaggggcattg |
179 |
Q |
| |
|
|||||||||||| || ||||| || || |||||||||||| || |||| || |||||||| |||||||| |||||| ||||| |||||||| ||||| |
|
|
| T |
30047078 |
gatatggtaaatcagataaaaataagttatctaagaaaccaaccagtaggggtctgaaaccgactgatatttgcaattactgtaaagagaagggacattg |
30047177 |
T |
|
| Q |
180 |
gaagcattattatcccaagaaga |
202 |
Q |
| |
|
|||| || ||| ||||||||||| |
|
|
| T |
30047178 |
gaagtatgattgtcccaagaaga |
30047200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 216
Target Start/End: Complemental strand, 20289334 - 20289198
Alignment:
| Q |
80 |
gatatggtaaatgagggaaaaagaaattttctaagaaaccagttagcagggatccgaaaccgattgatattttcaattattgtaaggagaaggggcattg |
179 |
Q |
| |
|
|||||||||||| |||| |||| || || |||||||||||||| || |||| || ||| ||| |||||||| |||||| | |||||||| ||||||||| |
|
|
| T |
20289334 |
gatatggtaaatcaggggaaaataagttctctaagaaaccagtcagtaggggtctgaattcgactgatatttgcaattactataaggagagggggcattg |
20289235 |
T |
|
| Q |
180 |
gaagcattattatcccaagaagaggtagatgcaacaa |
216 |
Q |
| |
|
|||| || | ||||||||||||| ||||||||||| |
|
|
| T |
20289234 |
gaagaatgaacgtcccaagaagaggcagatgcaacaa |
20289198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 9009598 - 9009471
Alignment:
| Q |
96 |
gaaaaagaaattttctaagaaaccagttagcagggatccgaaaccgattgatattttcaattattgtaaggagaaggggcattggaagcattattatccc |
195 |
Q |
| |
|
|||||| || || |||||||| ||| |||| || | || |||||||| |||||||| |||||| ||||||||||| | ||||||||| || ||| |||| |
|
|
| T |
9009598 |
gaaaaaaaagttctctaagaatccaattagtagaggtctgaaaccgactgatatttgcaattactgtaaggagaatgaccattggaagaatgattgtccc |
9009499 |
T |
|
| Q |
196 |
aagaagaggtagatgcaacaagagaagg |
223 |
Q |
| |
|
||||||||| | ||||||||| |||||| |
|
|
| T |
9009498 |
aagaagaggaaaatgcaacaatagaagg |
9009471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 53471727 - 53471630
Alignment:
| Q |
80 |
gatatggtaaatgagggaaaaagaaattttctaagaaaccagttagcagggatccgaaaccgattgatattttcaattattgtaaggagaaggggcat |
177 |
Q |
| |
|
|||||||||||| |||| |||| || || ||||||||||| || |||| || || ||||| |||||||| |||||| ||||||||||| |||||| |
|
|
| T |
53471727 |
gatatggtaaatcaggggaaaataagttctctaagaaaccgcacagaaggggtctgacaccgaatgatatttgcaattactgtaaggagaaagggcat |
53471630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University