View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6544_low_4 (Length: 471)
Name: NF6544_low_4
Description: NF6544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6544_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 8e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 342 - 452
Target Start/End: Original strand, 9951072 - 9951182
Alignment:
| Q |
342 |
gtattttatgagaatacaaaatttaatgagttaaaaactatgcatattatgtgtattgaaattaatttgtgtctttgattttttcctcttacaatgttgc |
441 |
Q |
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| T |
9951072 |
gtattttatgagaatacaaaatttaatgagttaaaaactatgcatattatgtgtattgaaattaatttgtgtctttgattttttcctcttacaatgttgc |
9951171 |
T |
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| Q |
442 |
tttccattagt |
452 |
Q |
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| T |
9951172 |
tttccattagt |
9951182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 187 - 304
Target Start/End: Original strand, 9950917 - 9951034
Alignment:
| Q |
187 |
caatctaggatatatacgaaaagaattagataaattggttaactaaattattcatattattatttaaagtgattgatagtaggggtatttattcaaagaa |
286 |
Q |
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| T |
9950917 |
caatcaaggatatatacgaaaagaattagataaattggttaactaaattattcatattattatttaaattgattgatagtaggggtatttattcaaagaa |
9951016 |
T |
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| Q |
287 |
aatgttgtcttgacattt |
304 |
Q |
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| T |
9951017 |
aatgttgtcttgacattt |
9951034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 9950739 - 9950851
Alignment:
| Q |
9 |
gaagaaaatagacatggagatttgcttaagacttatttgtatctttctggtagggttgatatggagatgattgagaaaactgttcagtatctcattggag |
108 |
Q |
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| T |
9950739 |
gaagaaaataggcatggagatttgcttaggacttatttgtatctttctggtagggttgatatggagatgattgagaaaactgttcagtatctcattggag |
9950838 |
T |
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| Q |
109 |
ctggcatggtgag |
121 |
Q |
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| T |
9950839 |
ctggcatggtgag |
9950851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 40742955 - 40743064
Alignment:
| Q |
9 |
gaagaaaatagacatggagatttgcttaagacttatttgtatctttctggtagggttgatatggagatgattgagaaaactgttcagtatctcattggag |
108 |
Q |
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||||| |||||||||||| |||| || || |||||| | ||||| |||||| | ||||||||| | ||||||||||| || |||| ||| | ||||||| |
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| T |
40742955 |
gaagagaatagacatggatatttactcaaaacttatctctatctctctggtcgagttgatatgcacatgattgagaagaccattcattatttgattggag |
40743054 |
T |
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| Q |
109 |
ctggcatggt |
118 |
Q |
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|||||||||| |
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| T |
40743055 |
ctggcatggt |
40743064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 40915222 - 40915149
Alignment:
| Q |
12 |
gaaaatagacatggagatttgcttaagacttatttgtatctttctggtagggttgatatggagatgattgagaa |
85 |
Q |
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| T |
40915222 |
gaaaacaggcatggagatttgcttaaaacttatctctatctttctggtcgggttgatatgcacatgatcgagaa |
40915149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 40946386 - 40946276
Alignment:
| Q |
8 |
cgaagaaaatagacatggagatttgcttaagacttatttgtatctttctggtagggttgatatggagatgattgagaaaactgttcagtatctcattgga |
107 |
Q |
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| T |
40946386 |
cgaagaaaatagacatggagatttactcaaaacttatctctatctctccggtcgagttgatatgtgcatgattgagaagactatccaatatttgattgga |
40946287 |
T |
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| Q |
108 |
gctggcatggt |
118 |
Q |
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|||||| |||| |
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| T |
40946286 |
gctggcgtggt |
40946276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 40921458 - 40921349
Alignment:
| Q |
9 |
gaagaaaatagacatggagatttgcttaagacttatttgtatctttctggtagggttgatatggagatgattgagaaaactgttcagtatctcattggag |
108 |
Q |
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||||||||||||||||||||||| || || |||||| | ||||| || ||| | ||||||||| ||||||||||| ||| | || | | | |||||| |
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| T |
40921458 |
gaagaaaatagacatggagatttactcaaaacttatctctatctctccggtcgagttgatatgtgcatgattgagaagactatccaatgtttgattggat |
40921359 |
T |
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| Q |
109 |
ctggcatggt |
118 |
Q |
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|||||||||| |
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| T |
40921358 |
ctggcatggt |
40921349 |
T |
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