View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6544_low_7 (Length: 356)
Name: NF6544_low_7
Description: NF6544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6544_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 31466406 - 31466069
Alignment:
| Q |
1 |
ttagaatagaaaacttgttatgcattagtagcacttagcgttagaaaactaaacttaagttggctaaattagcagagtacaaacattcccagatttattt |
100 |
Q |
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| T |
31466406 |
ttagaatagaaaacttgttatgcgttagtagcacttagcattagaaaactaaacttaagttggttaaattagcagagtacaaacattcccagatttattt |
31466307 |
T |
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| Q |
101 |
acagtagaacagaaagcttgttatggcctattagcagaacttaagttgccttaattagcagaattcaaacttttgcagaattattttcacattttatcca |
200 |
Q |
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| T |
31466306 |
acagtagaacagaaagcttgttatggcctattagcagaacttaagttgcctaaatttgcagaattcaaacttttgcagaattattttcacattttatcca |
31466207 |
T |
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| Q |
201 |
aaaaaggacttcaaaagtcgatcctagcgccgtctagttcagaagttagctatggttagttacacaaattcagtcatnnnnnnnttgtcataagtgaccg |
300 |
Q |
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| T |
31466206 |
aaaaaggacttcaaaagtcgatcctagcgccgtctagttccgaagttagctatggttagttacacaaattcagtcataaaaaaattgtcataagtgaccg |
31466107 |
T |
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| Q |
301 |
ccaacatggaagtctacatgcagctgctcatcaatatc |
338 |
Q |
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| T |
31466106 |
ccaacatggaagtttacatgcagctgctcatcaatatc |
31466069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 31453238 - 31453163
Alignment:
| Q |
183 |
attttcacattttatccaaaaaaggacttcaaaagtcgatcctagcgccgtctagttcagaagttagctatggtta |
258 |
Q |
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| T |
31453238 |
attttcacatttcatcccaaaaaggacttcaaaagttgatcctagggccgtccagttcagaagttagttatggtta |
31453163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 31453313 - 31453257
Alignment:
| Q |
71 |
agcagagtacaaacattcccagatttatttacagtagaacagaaagcttgttatggc |
127 |
Q |
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| T |
31453313 |
agcagagtacaaatgttcccagatttatttacaatggaagagaaatcttgttatggc |
31453257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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