View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6544_low_9 (Length: 350)
Name: NF6544_low_9
Description: NF6544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6544_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 41 - 333
Target Start/End: Complemental strand, 7458577 - 7458285
Alignment:
| Q |
41 |
tattaggtagggtttcgtttttggtgttatgtgcactgtatttgagttatattacttcctgcaatnnnnnnncaaaggttatgctgttgtttgttgactt |
140 |
Q |
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| T |
7458577 |
tatttggtagggattcgtttttggtgttatgtgcactgtatttgagttatattacttcctgcaataaaaaaacaaaagttatgctgttgtttgttgactt |
7458478 |
T |
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| Q |
141 |
tacttaattgctgtcaatcttttaaagccaaccaatgaatcgggaccagtagcattagcatatatactcatactaggttcaaccctataaatattccaaa |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7458477 |
tacttaattgctgtcaatcttttaaagccaaccaatgaatcgggaccagtagcattagcatatatactcatacttggttcaaccctataaatattccaaa |
7458378 |
T |
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| Q |
241 |
taggnnnnnnnnnnnnnnnncttggcattatgtttatttggaattctgtgcacccctctcccatgcacacaaacagcagaactaagcaacatg |
333 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7458377 |
taggaaaagaaaaagaaaaacttggcattatgtttatttggaattgtgtgcacccctctcccatgcacacaaacagcagaactaagcaacatg |
7458285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 42
Target Start/End: Complemental strand, 7458890 - 7458859
Alignment:
| Q |
11 |
aatattaagaatgaagttataaagaaaacata |
42 |
Q |
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| T |
7458890 |
aatattaagaatgaagttataaagaaaacata |
7458859 |
T |
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