View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6545_low_1 (Length: 432)

Name: NF6545_low_1
Description: NF6545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6545_low_1
NF6545_low_1
[»] chr2 (24 HSPs)
chr2 (12-414)||(9329261-9329663)
chr2 (169-350)||(9321810-9321987)
chr2 (157-332)||(9060265-9060440)
chr2 (169-330)||(8572671-8572831)
chr2 (12-279)||(9283394-9283658)
chr2 (12-329)||(9316690-9317004)
chr2 (66-279)||(12018134-12018344)
chr2 (56-279)||(10348509-10348732)
chr2 (12-279)||(9275183-9275452)
chr2 (96-279)||(10336560-10336740)
chr2 (169-279)||(9292747-9292857)
chr2 (169-272)||(10372701-10372804)
chr2 (158-268)||(9357924-9358034)
chr2 (170-284)||(12011808-12011922)
chr2 (143-344)||(7114803-7114998)
chr2 (169-284)||(10353964-10354079)
chr2 (169-317)||(12005347-12005495)
chr2 (170-285)||(7612716-7612831)
chr2 (174-279)||(11986745-11986850)
chr2 (170-293)||(8578731-8578854)
chr2 (170-249)||(9365415-9365494)
chr2 (177-293)||(17565320-17565436)
chr2 (171-246)||(14551140-14551215)
chr2 (38-90)||(9321670-9321722)
[»] scaffold0667 (1 HSPs)
scaffold0667 (169-279)||(5278-5388)
[»] chr3 (2 HSPs)
chr3 (169-320)||(37463341-37463492)
chr3 (96-288)||(39428633-39428816)
[»] chr5 (1 HSPs)
chr5 (96-286)||(36225494-36225686)
[»] chr4 (2 HSPs)
chr4 (169-284)||(26575698-26575813)
chr4 (143-246)||(561966-562066)
[»] chr8 (1 HSPs)
chr8 (174-279)||(41965942-41966047)
[»] chr1 (4 HSPs)
chr1 (175-264)||(29467060-29467149)
chr1 (169-264)||(29452586-29452681)
chr1 (175-277)||(29424039-29424141)
chr1 (169-277)||(29442581-29442689)


Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 12 - 414
Target Start/End: Original strand, 9329261 - 9329663
Alignment:
Q  12 atgaaccgataagagccatgttgctgttacgcgtgacaggagcaatgttggtgctgaaaggatggttgagtggaatcatggatttggttagattaggaag 111  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9329261 atgaaccgataagacccatgttgctgttacgcgtgacaggagcaatgttggtgctgaaaggatggttgagtggaatcatggatttggttagattaggaag 9329360  T
Q  112 atcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaattatttttgaggtgaaggttagtgaagttgtgggaatcgattatg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9329361 atcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaattatttttgaggtgaaggttagtgaagttgtgggaatcgattatg 9329460  T
Q  212 gatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgggagaggatttccgtgaacaattccggcagaagaacatcacccg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9329461 gatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgggagaggatttccgttaacaattccggcagaagaacatcacccg 9329560  T
Q  312 ccattggaaggaaggaaggttcgttctagggttgtgtggaactgctacgttttggttgatttagtgttttagtttctgttgaagtaagttttctagcgtg 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  9329561 ccattggaaggaaggaaggttcgttctagggttgtgtggaactgctacgttttggttgatttagggttttagtttttgttgaagtaagttttctagcgtg 9329660  T
Q  412 ctt 414  Q
    |||    
T  9329661 ctt 9329663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 169 - 350
Target Start/End: Original strand, 9321810 - 9321987
Alignment:
Q  169 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 268  Q
    ||||||||| ||||||||  |||||| ||| |||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||    
T  9321810 atttttgagatgaaggttgatgaagtggtgagaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgg 9321909  T
Q  269 gagaggatttccgtgaacaattccggcagaagaacatcacccgccattggaaggaaggaaggttcgttctagggttgtgtgg 350  Q
    ||||||||||||   |||||||||||| || ||||||||| |||||||    ||||||||||||||||||||||||||||||    
T  9321910 gagaggatttcctccaacaattccggcggaggaacatcactcgccatt----ggaaggaaggttcgttctagggttgtgtgg 9321987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 157 - 332
Target Start/End: Complemental strand, 9060440 - 9060265
Alignment:
Q  157 attgagggaattatttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgatttt 256  Q
    |||||||| |||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||      
T  9060440 attgaggggattatttttgaggtaaaggttagtgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatcggaatcggagaagtgattga 9060341  T
Q  257 accggtaagcgggagaggatttccgtgaacaattccggcagaagaacatcacccgccattggaaggaaggaaggtt 332  Q
    |||||||||||||||| |||||| |  |  | ||||||| ||||||||||| ||||||||||||||||||| ||||    
T  9060340 accggtaagcgggagaagatttcggcaagtatttccggcggaagaacatcagccgccattggaaggaaggagggtt 9060265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 169 - 330
Target Start/End: Complemental strand, 8572831 - 8572671
Alignment:
Q  169 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 268  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||| ||||    
T  8572831 atttttgaggtgaaggttggtgaagttgtgggaatcgattatagatttaagtgattttgaagttgatcggaatcggagaagtga-tttactggtatgcgg 8572733  T
Q  269 gagaggatttccgtgaacaattccggcagaagaacatcacccgccattggaaggaaggaagg 330  Q
    |||| |||||| ||||  | ||||| | ||||||||||||||||||||||||||||||||||    
T  8572732 gagaagatttcagtgactatttccgacggaagaacatcacccgccattggaaggaaggaagg 8572671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 12 - 279
Target Start/End: Complemental strand, 9283658 - 9283394
Alignment:
Q  12 atgaaccgataagagccatgttgctgttacgcgtgacaggagcaatgttggtgctgaaaggatggttgagtggaatcatggatttggttagattaggaag 111  Q
    ||||||| ||||||||| || |||||||| |||||| |||| | ||||||||| |||||||||||||||| || || |||||||||||||| ||||| |     
T  9283658 atgaaccaataagagccttgatgctgttaagcgtgaaaggatcgatgttggtggtgaaaggatggttgagcggtattatggatttggttaggttagggaa 9283559  T
Q  112 atcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaattatttttgaggtgaaggttagtgaagttgtgggaatcgattatg 211  Q
    ||||||||||||||||| ||| ||| |  | |||||||| ||||| ||||||||   | ||||||||||||||||  |||| ||||| ||||| |||| |    
T  9283558 atcgagttggtagagattggtcttgtgacggaggatgagtttgaagttgaggga---acttttgaggtgaaggttgatgaatttgtgagaatctattagg 9283462  T
Q  212 gatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgggagaggatttc 279  Q
    |||  ||||||||| |||||||| ||||||||||| |||||||| || ||||||| ||||| ||||||    
T  9283461 gatcgaagtgatttagaagttgatcggaatcggagtagtgatttaactggtaagcaggagaagatttc 9283394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 12 - 329
Target Start/End: Original strand, 9316690 - 9317004
Alignment:
Q  12 atgaaccgataagagccatgttgctgttacgcgtgacaggagcaatgttggtgctgaaaggatggttgagtggaatcatggatttggttagattaggaag 111  Q
    ||||||||| |||||||||  ||||||||  ||||||||||||  |||||      ||||||||||||||||||||||||||||| ||||| | ||| |     
T  9316690 atgaaccgagaagagccattatgctgttatacgtgacaggagctgtgttg------aaaggatggttgagtggaatcatggatttcgttaggtcagggaa 9316783  T
Q  112 atc---gagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaattatttttgaggtgaaggttagtgaagttgtgggaatcgatt 208  Q
    |||   || ||||||||| ||||  |||   |||||||| | |     ||||||||||||||||||||||||||||||  |||||||||| ||||| |||    
T  9316784 atcatcgatttggtagagttcggatttgtaatgaaggattaaggatcgattgagggaattatttttgaggtgaaggttgatgaagttgtgagaatctatt 9316883  T
Q  209 atggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgggagaggatttccgtgaacaattccggcagaagaacatcac 308  Q
    |  ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| |||||| | ||  | ||||||| ||||| | |||     
T  9316884 aaagatttaagtgattttgaagttgatcggaatcggagaagtgattttactggtaagtgggagaagatttcggcgagtatttccggcggaagaccgtcag 9316983  T
Q  309 ccgccattggaaggaaggaag 329  Q
    |||||||||||||||| ||||    
T  9316984 ccgccattggaaggaaagaag 9317004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 66 - 279
Target Start/End: Complemental strand, 12018344 - 12018134
Alignment:
Q  66 tgaaaggatggttgagtggaatcatggatttggttagattaggaagatcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgaggga 165  Q
    ||||||||||||||||||| || | ||   |||||||  |||| | || |||||||||||||| ||| | | |  | |||||||||||||||||||||||    
T  12018344 tgaaaggatggttgagtgggatgacgg---tggttagggtagggaaatggagttggtagagatgggtgtcgtgacggaggatgaggttgaaattgaggga 12018248  T
Q  166 attatttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaag 265  Q
        |||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||    
T  12018247 tgagtttttgagttgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcgaagaagtgattttactggtaag 12018148  T
Q  266 cgggagaggatttc 279  Q
    ||||||| ||||||    
T  12018147 cgggagaagatttc 12018134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 56 - 279
Target Start/End: Original strand, 10348509 - 10348732
Alignment:
Q  56 atgttggtgctgaaaggatggttgagtggaatcatggatttggttagattaggaagatcgagttggtagagatcggtattgagctga---aggatgaggt 152  Q
    ||||||||  |||| |||| |||||||||||| || ||||||||||| ||||| | || ||||||||||| ||||||  ||   |||   ||||||||||    
T  10348509 atgttggtagtgaagggatagttgagtggaatgatagatttggttaggttagggaaatggagttggtagaaatcggtggtgttgtgacggaggatgaggt 10348608  T
Q  153 tgaaattgagggaattatttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtga 252  Q
    ||||||| || ||||| |||   |||||||||||  |||| ||| |||||||||||| |||||||||||||||||| ||||| |||||||||||||||||    
T  10348609 tgaaatttagagaatttttt---aggtgaaggttgatgaatttgagggaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtga 10348705  T
Q  253 ttttaccggtaagcgggagaggatttc 279  Q
    |||||||||||||||||||| ||||||    
T  10348706 ttttaccggtaagcgggagaagatttc 10348732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 279
Target Start/End: Original strand, 9275183 - 9275452
Alignment:
Q  12 atgaaccgataagagccatgttgctgttacgcgtgacaggagcaatgttggtg----ctgaaaggatggttgagtggaatcatggatttggttagattag 107  Q
    ||||||| |||||||||||| ||||||||||||||| || | || ||||| |     |||||||||||||||||| | || ||| |||||||||| ||||    
T  9275183 atgaacctataagagccatggtgctgttacgcgtgaaagaatcattgttgcttgctactgaaaggatggttgagttgtattatgaatttggttaggttag 9275282  T
Q  108 gaagatcgagttggtagagatcgg-tattgagctgaaggatgaggttgaaattgagggaattatttttgaggtgaaggttagtgaagttgtgggaatcga 206  Q
    | | || ||||| |||||| | || | ||| | ||||| |||||||||||||||||||||||   |||||| ||||||||  |||||||||||||||| |    
T  9275283 ggaaattgagttcgtagagtttgggtgttgtgttgaagaatgaggttgaaattgagggaatt---tttgagatgaaggttgatgaagttgtgggaatcaa 9275379  T
Q  207 ttatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgggagaggatttc 279  Q
    | |  |||||||||||||||||  |||| ||||||| ||||||||||| ||| ||||| ||||||| ||||||    
T  9275380 tcaacgatttaagtgattttgagattgatcggaatcagagaagtgattgtactggtaaccgggagaagatttc 9275452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 96 - 279
Target Start/End: Original strand, 10336560 - 10336740
Alignment:
Q  96 tggttagattaggaagatcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaattatttttgaggtgaaggttagtgaagtt 195  Q
    ||||||| ||||| | || ||| |||||||| ||||| ||| |  | ||||||||||| ||||||||||||||   ||  |||||||||||  |||| ||    
T  10336560 tggttaggttagggaaatggaggtggtagaggtcggttttgcgacggaggatgaggttaaaattgagggaatt---ttgaaggtgaaggttgatgaattt 10336656  T
Q  196 gtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgggagaggatttc 279  Q
    ||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| ||||||    
T  10336657 gtgagaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaaacgggagaagatttc 10336740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 169 - 279
Target Start/End: Original strand, 9292747 - 9292857
Alignment:
Q  169 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 268  Q
    ||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |||| ||||||| ||||||||||||||| |||| ||||    
T  9292747 atttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgattttactggtacgcgg 9292846  T
Q  269 gagaggatttc 279  Q
    |||| ||||||    
T  9292847 gagaagatttc 9292857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 169 - 272
Target Start/End: Original strand, 10372701 - 10372804
Alignment:
Q  169 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 268  Q
    ||||| ||||||||||||  |||| ||||||||||||||||  ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10372701 attttggaggtgaaggttgatgaatttgtgggaatcgattaatgatttaaatgattttgaagttgatcggaatcggagaagtgattttaccggtaagcgg 10372800  T
Q  269 gaga 272  Q
    ||||    
T  10372801 gaga 10372804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 158 - 268
Target Start/End: Original strand, 9357924 - 9358034
Alignment:
Q  158 ttgagggaattatttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgatttta 257  Q
    |||| ||||||||||||||||||||||||  |||||||||| |||||||||| |||||||||||||||||||||||| |  || ||||||||||||||||    
T  9357924 ttgatggaattatttttgaggtgaaggtttatgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgatttta 9358023  T
Q  258 ccggtaagcgg 268  Q
    | |||||||||    
T  9358024 ctggtaagcgg 9358034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 170 - 284
Target Start/End: Complemental strand, 12011922 - 12011808
Alignment:
Q  170 tttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcggg 269  Q
    |||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    |||||||||    
T  12011922 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcggagaagtgattgtggatgtaagcggg 12011823  T
Q  270 agaggatttccgtga 284  Q
    ||| |||||| ||||    
T  12011822 agaagatttcggtga 12011808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 143 - 344
Target Start/End: Complemental strand, 7114998 - 7114803
Alignment:
Q  143 aggatgaggttgaaattgagggaattatttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatc 242  Q
    ||||||| ||||||||||| ||||||   ||| || ||||||||  |||| |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  7114998 aggatgaagttgaaattgaaggaatt---tttaagatgaaggttgatgaatttgtgggaatcgattaaggatttaagtgattttgaagttgatcggaatc 7114902  T
Q  243 ggagaagtgattttaccggtaagcgggagaggatttccgtgaacaattccggcagaagaacatcacccgccattggaaggaaggaaggttcgttctaggg 342  Q
    | |||||||||  ||| |||| ||| |||| |||||| |  |  | ||||||| ||||   |||| ||||||||||||||| | ||||||||||||||||    
T  7114901 gaagaagtgatcgtactggtaggcgagagaagatttcggatagtatttccggcggaag---atcagccgccattggaaggaggcaaggttcgttctaggg 7114805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 169 - 284
Target Start/End: Original strand, 10353964 - 10354079
Alignment:
Q  169 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 268  Q
    |||| |||||||||||||  |||| |||| ||||||||||| |||||||| ||||||||||||||| ||||||| |||||||||| ||||||||||||||    
T  10353964 atttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgg 10354063  T
Q  269 gagaggatttccgtga 284  Q
    || |||||||| ||||    
T  10354064 gaaaggatttcggtga 10354079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 169 - 317
Target Start/End: Complemental strand, 12005495 - 12005347
Alignment:
Q  169 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 268  Q
    |||||| || |||||||| ||||||||||| |||||||||||||||||||| |||| ||||||||| ||||||||||||||||||| |   |||||||||    
T  12005495 attttttagatgaaggttggtgaagttgtgagaatcgattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggaggtaagcgg 12005396  T
Q  269 gagaggatttccgtgaacaattccggcagaagaacatcacccgccattg 317  Q
    |||| |||||| ||||  | ||| |   |||||||||||| ||||||||    
T  12005395 gagaagatttcggtgagtatttctgaaggaagaacatcactcgccattg 12005347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 170 - 285
Target Start/End: Original strand, 7612716 - 7612831
Alignment:
Q  170 tttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcggg 269  Q
    ||||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||| ||| |||| ||||||||||| || | || |||||||||||| |    
T  7612716 tttttgaggtgaaggtttgtgaagttgtgggaatcaattaaggatttaagcgatttagaaattgatcggaatcggaggagggtttgtaccggtaagcgag 7612815  T
Q  270 agaggatttccgtgaa 285  Q
    |||||||||| |||||    
T  7612816 agaggatttcagtgaa 7612831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 174 - 279
Target Start/End: Complemental strand, 11986850 - 11986745
Alignment:
Q  174 tgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgggagag 273  Q
    |||||||||| || ||||||||||| ||||| |||||||||||||| |||| ||||||||| ||||||||||||||||||| |    ||||||||||||     
T  11986850 tgaggtgaagattggtgaagttgtgagaatcaattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggatgtaagcgggagaa 11986751  T
Q  274 gatttc 279  Q
    ||||||    
T  11986750 gatttc 11986745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 170 - 293
Target Start/End: Complemental strand, 8578854 - 8578731
Alignment:
Q  170 tttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcggg 269  Q
    |||||||||| | | || |||||| |||||||||| || | ||||  ||||||||| ||| |||| |||||||||||||| |||| ||||||||||||||    
T  8578854 tttttgaggtaatgtttggtgaaggtgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtaccggtaagcggg 8578755  T
Q  270 agaggatttccgtgaacaattccg 293  Q
    ||||||| ||  ||||||||||||    
T  8578754 agaggatatcgatgaacaattccg 8578731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 170 - 249
Target Start/End: Original strand, 9365415 - 9365494
Alignment:
Q  170 tttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaag 249  Q
    |||||||| || ||||| |||||| |||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  9365415 tttttgagatggaggttggtgaaggtgtgagaatcgattatggatttaagtgattttgaggttgatcggaatcggagaag 9365494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 177 - 293
Target Start/End: Complemental strand, 17565436 - 17565320
Alignment:
Q  177 ggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgggagaggat 276  Q
    |||||||||| |||||||| |||||||| ||||   ||||||||||||| || ||||| |||| |||||| || |||| ||| |||||||| ||||||||    
T  17565436 ggtgaaggttggtgaagttatgggaatcaattaaaaatttaagtgatttcgacgttgatcggagtcggaggagggattgtactggtaagcgagagaggat 17565337  T
Q  277 ttccgtgaacaattccg 293  Q
    ||| ||||| |||||||    
T  17565336 ttcagtgaataattccg 17565320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 14551140 - 14551215
Alignment:
Q  171 ttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggag 246  Q
    |||| |||||||| ||  ||||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||||    
T  14551140 tttttaggtgaagtttgatgaagttgtgggaatcgattagggattgaagtgattttgaagttgatcggaattggag 14551215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 9321670 - 9321722
Alignment:
Q  38 ttacgcgtgacaggagcaatgttggtgctgaaaggatggttgagtggaatcat 90  Q
    ||||| ||||||||||  || |||||| |||||||||||||||||||||||||    
T  9321670 ttacgtgtgacaggagtgattttggtggtgaaaggatggttgagtggaatcat 9321722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 169 - 279
Target Start/End: Original strand, 5278 - 5388
Alignment:
Q  169 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 268  Q
    ||||||| ||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5278 atttttgcggtgaaggttgatgaagttgtgagaatcgattatggatttaagtgattttgaagttgatcggaatcggagaagtgattttaccggtaagcgg 5377  T
Q  269 gagaggatttc 279  Q
    |||| ||||||    
T  5378 gagaagatttc 5388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 169 - 320
Target Start/End: Original strand, 37463341 - 37463492
Alignment:
Q  169 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 268  Q
    ||||||||| ||||||||  |||||||||| ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| |||    
T  37463341 atttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacgg 37463440  T
Q  269 gagaggatttccgtgaacaattccggcagaagaacatcacccgccattggaa 320  Q
    ||||||||||| | ||  | ||||||| ||||| | ||| ||||||||||||    
T  37463441 gagaggatttcggcgagtatttccggcggaagaccgtcatccgccattggaa 37463492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 96 - 288
Target Start/End: Original strand, 39428633 - 39428816
Alignment:
Q  96 tggttagattaggaagatcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaattatttttgaggtgaaggttagtgaagtt 195  Q
    ||||||| ||||| | ||||||||||||||||| |   ||| |  |||||||||||||||| |||||| | ||   ||||||||||||     |||||||    
T  39428633 tggttaggttagggaaatcgagttggtagagattgcagttgtggcgaaggatgaggttgaagttgaggtagtt---tttgaggtgaag-----tgaagtt 39428724  T
Q  196 gtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgggagaggatttccgtgaacaa 288  Q
    |||||||| ||||| |||||||| | ||||||||||||| |||||| |||| || ||||  ||||||||||||||||||||||| ||||||||    
T  39428725 gtgggaat-gattaaggatttaactcattttgaagttgatcggaattggaggagggattgcaccggtaagcgggagaggatttcggtgaacaa 39428816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 96 - 286
Target Start/End: Original strand, 36225494 - 36225686
Alignment:
Q  96 tggttagattaggaagatcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaattat--ttttgaggtgaaggttagtgaag 193  Q
    ||||||| ||||| | ||| ||||||||||| | ||| ||  |  |||||||||||||||| |||| ||| || |  ||||||||||||| |||||||||    
T  36225494 tggttaggttagggaaatcaagttggtagagtttggttttctggcgaaggatgaggttgaagttgaaggagttttaattttgaggtgaagattagtgaag 36225593  T
Q  194 ttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgggagaggatttccgtgaac 286  Q
    ||||| ||||||||||  ||||||||||||||||||||||| ||||||||||| || ||||  ||  ||||||||||||||||||| ||||||    
T  36225594 ttgtgcgaatcgattaacgatttaagtgattttgaagttgatcggaatcggaggagggattgcactagtaagcgggagaggatttcggtgaac 36225686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 169 - 284
Target Start/End: Original strand, 26575698 - 26575813
Alignment:
Q  169 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 268  Q
    |||| |||||||||||||  |||| |||| ||||||||||| | |||||||||||||||||||||| |||||||||||||||||| |||||||||| |||    
T  26575698 atttctgaggtgaaggttgatgaatttgtaggaatcgattaagaatttaagtgattttgaagttgatcggaatcggagaagtgatattaccggtaaacgg 26575797  T
Q  269 gagaggatttccgtga 284  Q
    |||| |||||| ||||    
T  26575798 gagaagatttcggtga 26575813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 561966 - 562066
Alignment:
Q  143 aggatgaggttgaaattgagggaattatttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatc 242  Q
    ||||||||||| ||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| || | |||||||    
T  561966 aggatgaggttaaaattgagggagtt---tttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagccattttgaacttaatcggaatc 562062  T
Q  243 ggag 246  Q
    ||||    
T  562063 ggag 562066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 174 - 279
Target Start/End: Complemental strand, 41966047 - 41965942
Alignment:
Q  174 tgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgggagag 273  Q
    |||||||||||||  ||||||||||||||||||||| ||||  ||||||||| || ||||| ||||||||||||| |||||||||||||||  ||||||     
T  41966047 tgaggtgaaggttgatgaagttgtgggaatcgattaaggatcgaagtgatttcgaggttgatcggaatcggagaactgattttaccggtaatagggagaa 41965948  T
Q  274 gatttc 279  Q
    ||||||    
T  41965947 gatttc 41965942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 175 - 264
Target Start/End: Complemental strand, 29467149 - 29467060
Alignment:
Q  175 gaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaa 264  Q
    ||||||||| ||  ||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||| || |||| |||||||||    
T  29467149 gaggtgaagtttgatgaagttgtgggaatcgattagggattgaagtgattttgaggttgaacggaatcggaggagggattgtaccggtaa 29467060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 169 - 264
Target Start/End: Complemental strand, 29452681 - 29452586
Alignment:
Q  169 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaa 264  Q
    ||||| ||||||||| ||  |||||||||| |||||||||| ||||| |||||||||||| ||||||||||||||||| || |||| |||||||||    
T  29452681 attttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcggaggagggattgtaccggtaa 29452586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 175 - 277
Target Start/End: Original strand, 29424039 - 29424141
Alignment:
Q  175 gaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgggagagg 274  Q
    ||||||||| ||  ||||| |||||||||||||||  |||| |||||||||||| ||||||||||||||||| || |||| |||||||||  | ||||||    
T  29424039 gaggtgaagcttgatgaagctgtgggaatcgattagagattgaagtgattttgaggttgaacggaatcggaggagggattgtaccggtaacagagagagg 29424138  T
Q  275 att 277  Q
    |||    
T  29424139 att 29424141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 169 - 277
Target Start/End: Complemental strand, 29442689 - 29442581
Alignment:
Q  169 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 268  Q
    ||||| ||||||||| ||  ||||||| ||||||||||||| ||||| ||||||||| || ||||||||||||||||| || |||| | |||||||  |     
T  29442689 attttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggattgtgccggtaacaga 29442590  T
Q  269 gagaggatt 277  Q
    |||||||||    
T  29442589 gagaggatt 29442581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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