View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6545_low_2 (Length: 283)
Name: NF6545_low_2
Description: NF6545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6545_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 266
Target Start/End: Complemental strand, 3654077 - 3653804
Alignment:
| Q |
10 |
gcacagagcgtcgcaagtgagtaacagaga--aaggctacactcttttccgccaaaatgaactagaaaaccctggaaatgaatggaacactgtcgcactt |
107 |
Q |
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| T |
3654077 |
gcacagagcgtcgcgagtgagtaacagagagaaaggctacactcttttccgccaaaatgaactagaaaaccctggaaatgaatggaacactgtcgcactt |
3653978 |
T |
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| Q |
108 |
acttttatttaagtttgagagtaagtaaattactagtagagtttattttatacttgcatgaattaaaacttttttaagtgtaaaa--------------- |
192 |
Q |
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| T |
3653977 |
acttttatttaagtttgagagtaagtaaaatactagtagagtttattttatacttgcatgaattaaaacttttttaagtgtaaaacatttttacacttac |
3653878 |
T |
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| Q |
193 |
-atgtattaattattaaactagtaatttagtcctccttggtttgtatttttcttaacaatatctatattttactt |
266 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3653877 |
gatgtattaa-tattaaattagtaatttagtcctccttggtttgtatttttcttaacaatatctatattttactt |
3653804 |
T |
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