View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6546_high_14 (Length: 322)
Name: NF6546_high_14
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6546_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 306
Target Start/End: Original strand, 26975692 - 26975987
Alignment:
| Q |
11 |
atcatcacactcttcacctcgttaaccgcaaccacaacctcatttcccattcaaaccgccacttacctcttcattcccttctcaacaacaccaccaccgc |
110 |
Q |
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| T |
26975692 |
atcatcacactctccacctcgttaaccgcaaacgcaacctcatttcccattcaaaccgccacttacctcttcattcccttctcaacaacaccaccactgc |
26975791 |
T |
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| Q |
111 |
tatccattccacaaaccaacgcattatttcatcctcgagccggaaccgtcgcttcgggttcctaacacctcgcgtacttcaaaatcaagaagtcgcaaat |
210 |
Q |
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| T |
26975792 |
tatccattccacaaaccaacgcattatttcatcctcgagccggaaccgtcgcttcgggttcctaacacctcgcgtacttcaaaatcaagaagtcgcaaac |
26975891 |
T |
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| Q |
211 |
gaatccgaacaccaagaacaaatcagccaggtttcttctaaagaacaagaagaagtgaaggaactactggttgagcaaagtatatggattcagatg |
306 |
Q |
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| T |
26975892 |
gaatccgaacaccaagaacaaatcagccaggtttcttctaaagaagaagaagaagtgaaggaactactggttgagcaaagtatatggattcagatg |
26975987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 110 - 306
Target Start/End: Complemental strand, 26991675 - 26991473
Alignment:
| Q |
110 |
ctatccattccacaaaccaacgcattatttcatcctcgagccggaaccgtcgcttcgggttcctaacacctcgcgtacttcaaaatcaagaagtcgcaaa |
209 |
Q |
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| T |
26991675 |
ctatccatccaacaagccagtgcattattacatcctcgagccagaaccgtcgcttcgagtttctaacagcttgctcagttcaaaattatgatgtcgcaga |
26991576 |
T |
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| Q |
210 |
tgaatccgaacaccaagaacaaatcagccaggtttcttctaaagaac---------aagaagaagtgaaggaactactggttgagcaaagtatatggatt |
300 |
Q |
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| T |
26991575 |
tgagtctgaagaaaaagatcaaatcagcgaggtttcttctaaggaacaagcacaagaagaagaagtgaagga---actggttgagcagagtatatggatt |
26991479 |
T |
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| Q |
301 |
cagatg |
306 |
Q |
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| T |
26991478 |
cagatg |
26991473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 306
Target Start/End: Complemental strand, 27006106 - 27005919
Alignment:
| Q |
110 |
ctatccattccacaaaccaacgcattatttcatcctcgagccggaaccgtcgcttcgggttcctaacacctcgcgtacttcaaaatcaagaagtcgcaaa |
209 |
Q |
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||||||||| ||||||||| |||||||| |||||||||||| |||||||||||||| ||| |||||| || || | |||||||| | || | | | |
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| T |
27006106 |
ctatccatttaacaaaccaatgcattattacatcctcgagccagaaccgtcgcttcgagtttctaacagcttgctcagttcaaaattacgatgctataga |
27006007 |
T |
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| Q |
210 |
tgaatccgaacaccaagaacaaatcagccaggtttcttctaaagaacaagaagaagtgaaggaactactggttgagcaaagtatatggattcagatg |
306 |
Q |
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| T |
27006006 |
tgaatctgaagaaaaagttcaaatcagcgaggtttcttcta------aagaagaagtgaagga---actggttgagcagagtatatggattcagatg |
27005919 |
T |
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