View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6546_high_19 (Length: 259)

Name: NF6546_high_19
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6546_high_19
NF6546_high_19
[»] chr1 (3 HSPs)
chr1 (1-93)||(33163380-33163472)
chr1 (90-241)||(33163509-33163660)
chr1 (7-58)||(44530596-44530645)
[»] chr6 (3 HSPs)
chr6 (3-66)||(9660661-9660721)
chr6 (7-64)||(7772170-7772225)
chr6 (3-58)||(19097785-19097838)
[»] chr3 (4 HSPs)
chr3 (3-58)||(48213752-48213805)
chr3 (7-61)||(30041005-30041057)
chr3 (9-58)||(49383823-49383870)
chr3 (3-58)||(26306591-26306644)
[»] chr4 (2 HSPs)
chr4 (3-55)||(42598706-42598756)
chr4 (7-58)||(17339078-17339127)
[»] chr8 (3 HSPs)
chr8 (7-58)||(5774048-5774097)
chr8 (11-58)||(8566202-8566247)
chr8 (7-58)||(14584119-14584168)
[»] chr7 (1 HSPs)
chr7 (7-58)||(6387325-6387374)
[»] chr5 (1 HSPs)
chr5 (7-58)||(13759435-13759484)
[»] chr2 (1 HSPs)
chr2 (7-58)||(26334833-26334882)


Alignment Details
Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 33163380 - 33163472
Alignment:
Q  1 tgaaaaggacaaaaagaattctcaaaagagtcttttataattagaaacggaggtagtaataattttattggcttccttataatcattttaaag 93  Q
    ||||||||||||||||||||||||||||||||| || |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33163380 tgaaaaggacaaaaagaattctcaaaagagtctcttgtaattataaacggaggtaataataattttattggcttccttataatcattttaaag 33163472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 90 - 241
Target Start/End: Original strand, 33163509 - 33163660
Alignment:
Q  90 aaaggaataaaaatatattccagtataattaataaatatcaactcatataaattcttccttnnnnnnnnnnnnnnctcatataaattc--ttttttatta 187  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||  |||||| |||    
T  33163509 aaagaaataaaaatatattccagtataattaataaatatcaactcatataaattcttcctt--gaaaaaaaaaaactcatataaattcttttttttttta 33163606  T
Q  188 caaagagacgaagtccgactcatataaattatattataaggtaatgacacattt 241  Q
    ||||| |||||||||| |||||||||||||||||| ||||||||||||||||||    
T  33163607 caaagggacgaagtccaactcatataaattatattctaaggtaatgacacattt 33163660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 44530596 - 44530645
Alignment:
Q  7 ggacaaaaagaattctcaaaagagtcttttataattagaaacggaggtagta 58  Q
    ||||||||| ||||||||||| ||||  |||||||||| |||||||||||||    
T  44530596 ggacaaaaaaaattctcaaaaaagtc--ttataattaggaacggaggtagta 44530645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 9660661 - 9660721
Alignment:
Q  3 aaaaggacaaaaagaattctcaaaagagtcttttataattagaaacggaggtagtaataatttt 66  Q
    ||||||||||||| |||||||||||| |||||  |||||||| ||||||||||||||| |||||    
T  9660661 aaaaggacaaaaaaaattctcaaaag-gtctt--ataattaggaacggaggtagtaattatttt 9660721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 7772225 - 7772170
Alignment:
Q  7 ggacaaaaagaattctcaaaagagtcttttataattagaaacggaggtagtaataatt 64  Q
    ||||||||| ||||||||||||||||  ||||||||||  |||||||||||| |||||    
T  7772225 ggacaaaaaaaattctcaaaagagtc--ttataattagggacggaggtagtattaatt 7772170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 19097785 - 19097838
Alignment:
Q  3 aaaaggacaaaaagaattctcaaaagagtcttttataattagaaacggaggtagta 58  Q
    ||||||||||||| |||||||||||| |||  ||||||||||| ||||||| ||||    
T  19097785 aaaaggacaaaaaaaattctcaaaagggtc--ttataattagagacggagggagta 19097838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 48213805 - 48213752
Alignment:
Q  3 aaaaggacaaaaagaattctcaaaagagtcttttataattagaaacggaggtagta 58  Q
    ||||||||||||| ||||||||||||||||  |||||||||  |||||||||||||    
T  48213805 aaaaggacaaaaaaaattctcaaaagagtc--ttataattaagaacggaggtagta 48213752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 30041005 - 30041057
Alignment:
Q  7 ggacaaaaagaattctcaaaagagtcttttataattagaaacggaggtagtaata 61  Q
    ||||||||| ||||||||||||||||  |||||||||| |||||||| |||||||    
T  30041005 ggacaaaaaaaattctcaaaagagtc--ttataattaggaacggagggagtaata 30041057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 49383823 - 49383870
Alignment:
Q  9 acaaaaagaattctcaaaagagtcttttataattagaaacggaggtagta 58  Q
    ||||||| ||||||||||||||||  ||||||||||| ||||||||||||    
T  49383823 acaaaaaaaattctcaaaagagtc--ttataattagagacggaggtagta 49383870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 26306591 - 26306644
Alignment:
Q  3 aaaaggacaaaaagaattctcaaaagagtcttttataattagaaacggaggtagta 58  Q
    ||||||||||||| |||||||||||| |||  |||||||||| |||||||| ||||    
T  26306591 aaaaggacaaaaaaaattctcaaaagggtc--ttataattaggaacggagggagta 26306644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 42598706 - 42598756
Alignment:
Q  3 aaaaggacaaaaagaattctcaaaagagtcttttataattagaaacggaggta 55  Q
    ||||||| ||||| | ||||||||||||||||  |||||||||||||||||||    
T  42598706 aaaaggataaaaaaatttctcaaaagagtctt--ataattagaaacggaggta 42598756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 17339127 - 17339078
Alignment:
Q  7 ggacaaaaagaattctcaaaagagtcttttataattagaaacggaggtagta 58  Q
    ||||||||| |||||||||||| |||||  ||||||||| ||||||||||||    
T  17339127 ggacaaaaaaaattctcaaaagggtctt--ataattagagacggaggtagta 17339078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 5774097 - 5774048
Alignment:
Q  7 ggacaaaaagaattctcaaaagagtcttttataattagaaacggaggtagta 58  Q
    ||||||||| ||||||||||||||||  ||||||||||  ||||||||||||    
T  5774097 ggacaaaaaaaattctcaaaagagtc--ttataattagggacggaggtagta 5774048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 8566247 - 8566202
Alignment:
Q  11 aaaaagaattctcaaaagagtcttttataattagaaacggaggtagta 58  Q
    ||||| ||||||||||||||||||  |||||||| |||||||||||||    
T  8566247 aaaaaaaattctcaaaagagtctt--ataattaggaacggaggtagta 8566202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 14584119 - 14584168
Alignment:
Q  7 ggacaaaaagaattctcaaaagagtcttttataattagaaacggaggtagta 58  Q
    ||||||||| |||||||||||| |||  |||||||||| |||||||||||||    
T  14584119 ggacaaaaaaaattctcaaaagggtc--ttataattaggaacggaggtagta 14584168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 6387374 - 6387325
Alignment:
Q  7 ggacaaaaagaattctcaaaagagtcttttataattagaaacggaggtagta 58  Q
    ||||||||| ||||||||||||||||  ||||||||||| ||||||| ||||    
T  6387374 ggacaaaaaaaattctcaaaagagtc--ttataattagagacggagggagta 6387325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 13759435 - 13759484
Alignment:
Q  7 ggacaaaaagaattctcaaaagagtcttttataattagaaacggaggtagta 58  Q
    ||||||||| |||||||||||| |||  |||||||||| |||||||||||||    
T  13759435 ggacaaaaaaaattctcaaaagggtc--ttataattaggaacggaggtagta 13759484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 26334833 - 26334882
Alignment:
Q  7 ggacaaaaagaattctcaaaagagtcttttataattagaaacggaggtagta 58  Q
    ||||||||| ||||||||||||||||  ||||||||||  ||||||||||||    
T  26334833 ggacaaaaaaaattctcaaaagagtc--ttataattagggacggaggtagta 26334882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University