View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6546_high_23 (Length: 250)
Name: NF6546_high_23
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6546_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 32804872 - 32804630
Alignment:
| Q |
1 |
aggtaacgagccttgtcgaaacatcatgtcggacgaaagatgacaagcagagatgttttcatgaactacatgatctcttttggagcgtctctattgtgtt |
100 |
Q |
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| T |
32804872 |
aggtaacgagccttgtcgaaacatcatgtcggacgaaagatgacaagcagagatgttttcatgaactacatgatctcttttggagcgtctctattgtgtt |
32804773 |
T |
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| Q |
101 |
ttctttcagatgttttgtgagtaataagaagaacaaagacacagtggtggtggatcacggcggagtcattgaccttcacggcagcgcttaaggaagca-- |
198 |
Q |
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| T |
32804772 |
ttctttcagatgttttgtgagtaataagaagaacaaagacacagtggtggtggatcacggcggagtcattgaccttcacggcagcgcttaaggaagcaga |
32804673 |
T |
|
| Q |
199 |
-----tgagagggagaagaaagggaacagtgaaaggttcattt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
32804672 |
aaacgtgagagggagaagaaagggaacagtgaaaggttcattt |
32804630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 160
Target Start/End: Complemental strand, 34153397 - 34153313
Alignment:
| Q |
73 |
atctcttttggagcgtctctattgtgttttctttcagatgttttgtgagtaataagaagaacaaagacacagtggtggtggatcacgg |
160 |
Q |
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| T |
34153397 |
atctctcttggagtgtctctgttgttttttctttcagatgttttatgagtaata---agaacaaagacacggtggcggcggatcacgg |
34153313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 48167237 - 48167271
Alignment:
| Q |
132 |
aacaaagacacagtggtggtggatcacggcggagt |
166 |
Q |
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| T |
48167237 |
aacaaagacacggtggtggtggatcacggcggagt |
48167271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 184
Target Start/End: Original strand, 7317745 - 7317846
Alignment:
| Q |
80 |
ttggagcgtctctattgtgttttctttcagatgttttgtgagtaataagaagaacaaagacacagtggtggtggatcacggcggagtcattgaccttcac |
179 |
Q |
| |
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||||||||||||| |||| |||||||||||||||||| |||||||| ||||||||||||| |||| || |||||||||| |||| |||| ||||| |
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| T |
7317745 |
ttggagcgtctctgttgttttttctttcagatgttttatgagtaat---tagaacaaagacacggtggcggcggatcacggcagagtgattggtcttcat |
7317841 |
T |
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| Q |
180 |
ggcag |
184 |
Q |
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||||| |
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| T |
7317842 |
ggcag |
7317846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 184
Target Start/End: Complemental strand, 17037599 - 17037491
Alignment:
| Q |
73 |
atctcttttggagcgtctctattgtgttttctttcagatgttttgtgagtaataagaagaacaaagacacagtggtggtggatcacggcggagtcattga |
172 |
Q |
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|||||| |||||| |||||| ||| |||||||||||||||||| ||||||||| ||||||||||||| |||| || |||||||||| |||| |||| |
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| T |
17037599 |
atctctcttggagtgtctctgatgttttttctttcagatgttttatgagtaata---agaacaaagacacggtggcggcggatcacggcagagtgattgg |
17037503 |
T |
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| Q |
173 |
ccttcacggcag |
184 |
Q |
| |
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||||| ||||| |
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| T |
17037502 |
tcttcatggcag |
17037491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 46654403 - 46654437
Alignment:
| Q |
132 |
aacaaagacacagtggtggtggatcacggcggagt |
166 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| |
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| T |
46654403 |
aacaaagacacagtggtggtggatcacggcagagt |
46654437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 1253239 - 1253273
Alignment:
| Q |
132 |
aacaaagacacagtggtggtggatcacggcggagt |
166 |
Q |
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|||||||||||||||||||||||| |||||||||| |
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| T |
1253239 |
aacaaagacacagtggtggtggatgacggcggagt |
1253273 |
T |
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