View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6546_high_25 (Length: 244)

Name: NF6546_high_25
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6546_high_25
NF6546_high_25
[»] chr2 (9 HSPs)
chr2 (1-166)||(35346489-35346667)
chr2 (193-242)||(31320325-31320374)
chr2 (15-67)||(35351576-35351628)
chr2 (15-66)||(35335990-35336041)
chr2 (15-57)||(35347794-35347836)
chr2 (193-239)||(9447044-9447090)
chr2 (15-44)||(35343135-35343164)
chr2 (15-44)||(35368610-35368639)
chr2 (60-96)||(35351717-35351753)
[»] chr5 (1 HSPs)
chr5 (193-239)||(31610113-31610159)


Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 35346489 - 35346667
Alignment:
Q  1 aatcaagaataaccaaatagaatgtttgagtggatgcatataatagttgggaacatataaaatgttgtcatttcatgatgttctttggaagtcaacaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35346489 aatcaagaataaccaaatagaatgtttgagtggatgcatataatagttgggaacatataaaatgttgtcatttcatgatgttctttggaagtcaacaatc 35346588  T
Q  101 cagcgac-------------ttgcttggatcatatttaattttggtgatatcacaacttgataaacactatacacccaa 166  Q
    |||||||             ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35346589 cagcgacgagagtaataattttgcttggatcatatttaattttggtgatattacaacttgataaacactatacacccaa 35346667  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 31320325 - 31320374
Alignment:
Q  193 ttgttgaaatttccatatcttgcagttgttgttctcatttgggttcatct 242  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  31320325 ttgttgaaagttccatatcttgcagttgttgttcttatttgggttcatct 31320374  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 35351576 - 35351628
Alignment:
Q  15 aaatagaatgtttgagtggatgcatataatagttgggaacatataaaatgttg 67  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||| |||||    
T  35351576 aaatcgaatgtttgagtggatgcatataatagttgggaacatttaaagtgttg 35351628  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 35335990 - 35336041
Alignment:
Q  15 aaatagaatgtttgagtggatgcatataatagttgggaacatataaaatgtt 66  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||| ||||    
T  35335990 aaataaaatgtttgagtggatgcatataatggttgggaacatataaagtgtt 35336041  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 35347836 - 35347794
Alignment:
Q  15 aaatagaatgtttgagtggatgcatataatagttgggaacata 57  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  35347836 aaatagaatgtttgagtggatgcatataattgttgggaacata 35347794  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 9447044 - 9447090
Alignment:
Q  193 ttgttgaaatttccatatcttgcagttgttgttctcatttgggttca 239  Q
    ||||||||| ||||||||||||||||||||||||| || ||||||||    
T  9447044 ttgttgaaagttccatatcttgcagttgttgttcttatgtgggttca 9447090  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 35343164 - 35343135
Alignment:
Q  15 aaatagaatgtttgagtggatgcatataat 44  Q
    ||||||||||||||||||||||||||||||    
T  35343164 aaatagaatgtttgagtggatgcatataat 35343135  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 35368610 - 35368639
Alignment:
Q  15 aaatagaatgtttgagtggatgcatataat 44  Q
    ||||||||||||||||||||||||||||||    
T  35368610 aaatagaatgtttgagtggatgcatataat 35368639  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 35351717 - 35351753
Alignment:
Q  60 aaatgttgtcatttcatgatgttctttggaagtcaac 96  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  35351717 aaatgttgtcatttcatgatattctttggaagccaac 35351753  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 31610113 - 31610159
Alignment:
Q  193 ttgttgaaatttccatatcttgcagttgttgttctcatttgggttca 239  Q
    ||||||||| |||||||| ||| |||||||||||| |||||||||||    
T  31610113 ttgttgaaagttccatattttgtagttgttgttcttatttgggttca 31610159  T

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