View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6546_high_32 (Length: 214)
Name: NF6546_high_32
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6546_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 36571997 - 36572114
Alignment:
| Q |
1 |
ttagtttttgcaagtgctaatctacaacactaaacaaacaataatgcttatactcctctattatttagcatgtcattttgtaatattttattgtttaata |
100 |
Q |
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| T |
36571997 |
ttagtttttgcaagtgctaatctacaacactaaacaaacaataatgcttatactcctctattatttagcatgtcattttgtaatattttattgtttaata |
36572096 |
T |
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| Q |
101 |
aaaatctattgttcctct |
118 |
Q |
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|||||||||||||||||| |
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| T |
36572097 |
aaaatctattgttcctct |
36572114 |
T |
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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 35762146 - 35762228
Alignment:
| Q |
11 |
caagtgctaatctacaacactaaacaaacaataatgcttatactcctctattatttagcatgtcattttgtaatattttattg |
93 |
Q |
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| T |
35762146 |
caagtgcaagtctacgacactaaacaagcaatcatgcctatatttctctaatatttagcattttattttgtaatattttattg |
35762228 |
T |
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