View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6546_high_5 (Length: 458)

Name: NF6546_high_5
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6546_high_5
NF6546_high_5
[»] chr2 (2 HSPs)
chr2 (88-442)||(41864429-41864786)
chr2 (43-90)||(30189537-30189584)
[»] chr4 (3 HSPs)
chr4 (17-88)||(46956327-46956398)
chr4 (38-85)||(8449413-8449460)
chr4 (38-88)||(15163397-15163447)
[»] chr7 (2 HSPs)
chr7 (20-87)||(13841829-13841896)
chr7 (29-87)||(7226717-7226774)
[»] chr3 (10 HSPs)
chr3 (17-87)||(25443694-25443764)
chr3 (17-87)||(35750741-35750811)
chr3 (28-87)||(47050834-47050892)
chr3 (43-89)||(22782879-22782925)
chr3 (43-89)||(22787243-22787289)
chr3 (26-84)||(18541848-18541905)
chr3 (43-88)||(18541807-18541852)
chr3 (55-88)||(47053960-47053993)
chr3 (29-88)||(22369634-22369693)
chr3 (29-88)||(22359730-22359788)
[»] chr5 (2 HSPs)
chr5 (28-87)||(22129465-22129524)
chr5 (27-87)||(31574625-31574684)
[»] chr8 (5 HSPs)
chr8 (43-89)||(5614602-5614648)
chr8 (198-258)||(42120132-42120192)
chr8 (42-87)||(30783836-30783881)
chr8 (45-87)||(23643122-23643164)
chr8 (26-88)||(23646276-23646337)
[»] scaffold0024 (1 HSPs)
scaffold0024 (48-87)||(84443-84482)
[»] chr6 (1 HSPs)
chr6 (43-87)||(2845559-2845603)
[»] scaffold0126 (2 HSPs)
scaffold0126 (48-87)||(15866-15905)
scaffold0126 (55-88)||(541-574)


Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 88 - 442
Target Start/End: Original strand, 41864429 - 41864786
Alignment:
Q  88 cctcacattctacattagagacactttgcacaaattaatctgatggatgcattcttcaaaactttttgtattaaacttgtaacaattaatgtgtgttttc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  41864429 cctcacattctacattagagacactttgcacaaattaatctgatggatgcattcttcaaaactttttgtattaaacttgtaacaattaatgtgtgtttac 41864528  T
Q  188 tcaactaattatcaggatgcattactggagaaatatagtactacagagatattcagtgagctagaacttcatcaattccgtcgaccaaaaagatcaatat 287  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41864529 tcaactaattttcaggatgcattactggagaaatatagtactacagagatattcagtgagctagaacttcatcaattccgtcgaccaaaaagatcaatat 41864628  T
Q  288 ttgtaagttttgagttggattatgatagatagattaaacttattatttataatcactttattcgttatctatt---taacaatcgttctattcataataa 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  41864629 ttgtaagttttgagttggattatgatagatagattaaacttattatttataatcactttattcgttatctatttaataacaatcgttctattcataataa 41864728  T
Q  385 attttcatttcaattgaactactgcaggttatggcttgttggtcaagtttcctttgct 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41864729 attttcatttcaattgaactactgcaggttatggcttgttggtcaagtttcctttgct 41864786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 30189584 - 30189537
Alignment:
Q  43 tgtcaaaataaatcctaaaaattacgtaatgacagcatgtcatcacct 90  Q
    ||||||||||| |||||||||||||||||||||| ||| | |||||||    
T  30189584 tgtcaaaataagtcctaaaaattacgtaatgacaacatataatcacct 30189537  T

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Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 46956327 - 46956398
Alignment:
Q  17 catattgcacagaactctaacaaaattgtcaaaataaatcctaaaaattacgtaatgacagcatgtcatcac 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46956327 catattgcacagaactctaacaaaattgtcaaaataaatcctaaaaattacgtaatgacagcatgtcatcac 46956398  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 8449413 - 8449460
Alignment:
Q  38 aaaattgtcaaaataaatcctaaaaattacgtaatgacagcatgtcat 85  Q
    |||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  8449413 aaaaatgtcaaaataagtcctaaaatttacgtaatgacagcatgtcat 8449460  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 15163447 - 15163397
Alignment:
Q  38 aaaattgtcaaaataaatcctaaaaattacgtaatgacagcatgtcatcac 88  Q
    |||||| ||| ||||| || ||||||||||||||||||| |||||||||||    
T  15163447 aaaattatcataataagtcttaaaaattacgtaatgacaacatgtcatcac 15163397  T

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Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 13841896 - 13841829
Alignment:
Q  20 attgcacagaactctaacaaaattgtcaaaataaatcctaaaaattacgtaatgacagcatgtcatca 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13841896 attgcacagaactctaacaaaattgtcaaaataaatcctaaaaattacgtaatgacagcatgtcatca 13841829  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 7226774 - 7226717
Alignment:
Q  29 aactctaacaaaattgtcaaaataaatcctaaaaattacgtaatgacagcatgtcatca 87  Q
    ||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  7226774 aactctatcaaaat-gtcaaaataagtcctaaaaattacgtaatgacagcatgtcatca 7226717  T

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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 25443694 - 25443764
Alignment:
Q  17 catattgcacagaactctaacaaaattgtcaaaataaatcctaaaaattacgtaatgacagcatgtcatca 87  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25443694 catattgtacagaactctaacaaaattgtcaaaataaatcctaaaaattacgtaatgacagcatgtcatca 25443764  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 35750811 - 35750741
Alignment:
Q  17 catattgcacagaactctaacaaaattgtcaaaataaatcctaaaaattacgtaatgacagcatgtcatca 87  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||    
T  35750811 catattgcacagaactctaacaaaattgtcaaaataagtcctaaaaattacgtaatgacaagatgtcatca 35750741  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 47050892 - 47050834
Alignment:
Q  28 gaactctaacaaaattgtcaaaataaatcctaaaaattacgtaatgacagcatgtcatca 87  Q
    |||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  47050892 gaactctatcaaaat-gtcaaaataaaccctaaaaattacgtaatgacagcatgtcatca 47050834  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 22782925 - 22782879
Alignment:
Q  43 tgtcaaaataaatcctaaaaattacgtaatgacagcatgtcatcacc 89  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  22782925 tgtcaaaataaatcctaaaaattacgtaatgacaacatgtcatcacc 22782879  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 22787289 - 22787243
Alignment:
Q  43 tgtcaaaataaatcctaaaaattacgtaatgacagcatgtcatcacc 89  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  22787289 tgtcaaaataaatcctaaaaattacgtaatgacaacatgtcatcacc 22787243  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 18541905 - 18541848
Alignment:
Q  26 cagaactctaacaaaattgtcaaaataaatcctaaaaattacgtaatgacagcatgtca 84  Q
    |||||||||| |||||| |||||||||| ||||||| |||||||||||||| |||||||    
T  18541905 cagaactctatcaaaat-gtcaaaataagtcctaaatattacgtaatgacaacatgtca 18541848  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 18541852 - 18541807
Alignment:
Q  43 tgtcaaaataaatcctaaaaattacgtaatgacagcatgtcatcac 88  Q
    ||||||||||| ||||||| |||||||||||||| |||||||||||    
T  18541852 tgtcaaaataagtcctaaatattacgtaatgacaacatgtcatcac 18541807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 47053993 - 47053960
Alignment:
Q  55 tcctaaaaattacgtaatgacagcatgtcatcac 88  Q
    ||||||||||||||||||||||||||||||||||    
T  47053993 tcctaaaaattacgtaatgacagcatgtcatcac 47053960  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 22369693 - 22369634
Alignment:
Q  29 aactctaacaaaattgtcaaaataaatcctaaaaa-ttacgtaatgacagcatgtcatcac 88  Q
    ||||||| |||||| |||||||||| ||||||||| ||||||||||||| |||||||||||    
T  22369693 aactctatcaaaat-gtcaaaataagtcctaaaaaattacgtaatgacaacatgtcatcac 22369634  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 22359788 - 22359730
Alignment:
Q  29 aactctaacaaaattgtcaaaataaatcctaaaaattacgtaatgacagcatgtcatcac 88  Q
    ||||||| |||||| |||||||||| ||  |||||||||||||||||| |||||||||||    
T  22359788 aactctatcaaaat-gtcaaaataagtctaaaaaattacgtaatgacaacatgtcatcac 22359730  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 22129524 - 22129465
Alignment:
Q  28 gaactctaacaaaattgtcaaaataaatcctaaaaattacgtaatgacagcatgtcatca 87  Q
    |||||||| ||||||||| ||||||| |||||||||||| ||||||||||||||||||||    
T  22129524 gaactctatcaaaattgtgaaaataagtcctaaaaattatgtaatgacagcatgtcatca 22129465  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 31574684 - 31574625
Alignment:
Q  27 agaactctaacaaaattgtcaaaataaatcctaaaaattacgtaatgacagcatgtcatca 87  Q
    ||||||||| |||||| |||||||||| ||||||| |||||||||||||||||||||||||    
T  31574684 agaactctatcaaaat-gtcaaaataagtcctaaatattacgtaatgacagcatgtcatca 31574625  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 5614602 - 5614648
Alignment:
Q  43 tgtcaaaataaatcctaaaaattacgtaatgacagcatgtcatcacc 89  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  5614602 tgtcaaaataaatcctaaaaattacgtaatgacaacatgtcatcacc 5614648  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 42120192 - 42120132
Alignment:
Q  198 atcaggatgcattactggagaaatatagtactacagagatattcagtgagctagaacttca 258  Q
    |||||||||| |||||||||||||||| ||||||||| ||||||||||| || ||||||||    
T  42120192 atcaggatgctttactggagaaatataatactacagacatattcagtgaactcgaacttca 42120132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 30783881 - 30783836
Alignment:
Q  42 ttgtcaaaataaatcctaaaaattacgtaatgacagcatgtcatca 87  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||    
T  30783881 ttgtaaaaataagtcctaaaaattacgtaatgacagcatgtcatca 30783836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 23643164 - 23643122
Alignment:
Q  45 tcaaaataaatcctaaaaattacgtaatgacagcatgtcatca 87  Q
    ||||||||| |||||||||||||||||||||| ||||||||||    
T  23643164 tcaaaataagtcctaaaaattacgtaatgacaacatgtcatca 23643122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 23646337 - 23646276
Alignment:
Q  26 cagaactctaacaaaattgtcaaaataaatcctaaaaattacgtaatgacagcatgtcatcac 88  Q
    |||||||||| |||||| |||||||||| |||||||||||| |||||| ||| ||||||||||    
T  23646337 cagaactctatcaaaat-gtcaaaataagtcctaaaaattatgtaatggcagaatgtcatcac 23646276  T

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Target: scaffold0024 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 84482 - 84443
Alignment:
Q  48 aaataaatcctaaaaattacgtaatgacagcatgtcatca 87  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  84482 aaataaatcctaaaaattacgtaatgacagcatgtcatca 84443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 2845603 - 2845559
Alignment:
Q  43 tgtcaaaataaatcctaaaaattacgtaatgacagcatgtcatca 87  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||    
T  2845603 tgtcaaaataagtcctaaaaattacataatgacagcatatcatca 2845559  T

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Target: scaffold0126 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 15866 - 15905
Alignment:
Q  48 aaataaatcctaaaaattacgtaatgacagcatgtcatca 87  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  15866 aaataagtcctaaaaattacgtaatgatagcatgtcatca 15905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 541 - 574
Alignment:
Q  55 tcctaaaaattacgtaatgacagcatgtcatcac 88  Q
    |||||||||||| |||||||||||||||||||||    
T  541 tcctaaaaattatgtaatgacagcatgtcatcac 574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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