View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6546_high_6 (Length: 436)

Name: NF6546_high_6
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6546_high_6
NF6546_high_6
[»] chr3 (6 HSPs)
chr3 (19-235)||(30717466-30717682)
chr3 (234-436)||(30717707-30717909)
chr3 (333-404)||(44717077-44717148)
chr3 (330-404)||(26007779-26007853)
chr3 (255-309)||(26007679-26007733)
chr3 (337-385)||(5171099-5171147)
[»] chr1 (5 HSPs)
chr1 (255-356)||(44901416-44901512)
chr1 (184-229)||(36495558-36495603)
chr1 (255-292)||(33185039-33185076)
chr1 (255-292)||(33858188-33858225)
chr1 (255-292)||(33922698-33922735)
[»] chr8 (1 HSPs)
chr8 (255-331)||(5124499-5124575)
[»] scaffold0004 (1 HSPs)
scaffold0004 (257-310)||(228047-228101)
[»] chr5 (2 HSPs)
chr5 (255-331)||(30874658-30874734)
chr5 (186-230)||(30212920-30212964)
[»] chr4 (1 HSPs)
chr4 (280-334)||(30496703-30496757)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 30717466 - 30717682
Alignment:
Q  19 cacctacacaaacacagcaggtacaacacactacactagagcatgtgcagatccaaaaaagatgttaaagagccaaaactatgtgtcataacaaataagt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||| ||    
T  30717466 cacctacacaaacacagcaggtacaacacactacactagagcatgtgcagatccaagaaagatgttacagagccaaacctatgtgtcataacaaataggt 30717565  T
Q  119 acatattttccatgttgctgccctcaaagccagttcatttcttattcatatgtattaatttctatgtagtcaatcccggatagcggccgaccccaagagt 218  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30717566 ccatattttccatgttgctgccctcaaagccagttcatttcttattcatatgtattaatttctatgtagtcaatcccggatagcggccgaccccaaaagt 30717665  T
Q  219 gggatagcgggtagcgg 235  Q
    |||||||||||||||||    
T  30717666 gggatagcgggtagcgg 30717682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 234 - 436
Target Start/End: Original strand, 30717707 - 30717909
Alignment:
Q  234 ggacaaattacaataatgaggtaaagtataaacaaccatatatttgatataaaattaaacaaataactcaaaactcatggaacactcatacatcaaaaac 333  Q
    ||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30717707 ggacaaattacatgaatgaggtaaagtataaaaaaccatatatttgatataaaattaaacaaataactcaaaactcatggaacactcataaatcaaaaac 30717806  T
Q  334 attcacaagtcttaatcaaaacattacatccaattccaaactccaacaaaagtcaaggattggccgggatcctctccgttgcgattttcctctgtgctcc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  30717807 attcacaagtcttaatcaaaacattacatccaattccaaactccaacacaagtcaaggattggccgggatcctctccgttgcgattttcctctgggctgc 30717906  T
Q  434 tcc 436  Q
    |||    
T  30717907 tcc 30717909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 333 - 404
Target Start/End: Original strand, 44717077 - 44717148
Alignment:
Q  333 cattcacaagtcttaatcaaaacattacatccaattccaaactccaacaaaagtcaaggattggccgggatc 404  Q
    ||||| |||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  44717077 cattcccaagtcttaatcaaaacattacatccaattccaaataccaacaaaattcaaggattggccgggatc 44717148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 404
Target Start/End: Original strand, 26007779 - 26007853
Alignment:
Q  330 aaacattcacaagtcttaatcaaaacattacatccaattccaaactccaacaaaagtcaaggattggccgggatc 404  Q
    |||||||||||||||||||||||||||| ||||| |||| ||||  | ||||||| |||||||||||||||||||    
T  26007779 aaacattcacaagtcttaatcaaaacatgacatcaaatttcaaatacaaacaaaaatcaaggattggccgggatc 26007853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 26007679 - 26007733
Alignment:
Q  255 taaagtataaacaaccatatatttgatataaaattaaacaaataactcaaaactc 309  Q
    |||| ||||||||| ||||||||| | ||||||||||||||| |||| |||||||    
T  26007679 taaaatataaacaaacatatatttaaaataaaattaaacaaacaacttaaaactc 26007733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 385
Target Start/End: Original strand, 5171099 - 5171147
Alignment:
Q  337 cacaagtcttaatcaaaacattacatccaattccaaactccaacaaaag 385  Q
    |||||||||||||||||| ||||||| ||| ||||||  ||||||||||    
T  5171099 cacaagtcttaatcaaaagattacattcaaatccaaataccaacaaaag 5171147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 255 - 356
Target Start/End: Original strand, 44901416 - 44901512
Alignment:
Q  255 taaagtataaacaaccatatatttgatataaaattaaacaaataactcaaaactcatggaacactcatacatcaaaaacattcacaagtcttaatcaaaa 354  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||||| |||||| |||| ||||| |||||||     ||||||||||||||||||    
T  44901416 taaaatataaacaaccatatatttaatataaaagtaaacaaataactcaaagctcatgaaacattcataaatcaaaa-----cacaagtcttaatcaaaa 44901510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 36495558 - 36495603
Alignment:
Q  184 gtagtcaatcccggatagcggccgaccccaagagtgggatagcggg 229  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  36495558 gtagtcaatcccggatagcggccaaccccaaaagtgggatagcggg 36495603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 33185039 - 33185076
Alignment:
Q  255 taaagtataaacaaccatatatttgatataaaattaaa 292  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  33185039 taaagtataaacaaacatatatttaatataaaattaaa 33185076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 33858188 - 33858225
Alignment:
Q  255 taaagtataaacaaccatatatttgatataaaattaaa 292  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  33858188 taaagtataaacaaacatatatttaatataaaattaaa 33858225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 33922735 - 33922698
Alignment:
Q  255 taaagtataaacaaccatatatttgatataaaattaaa 292  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  33922735 taaagtataaacaaacatatatttaatataaaattaaa 33922698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 255 - 331
Target Start/End: Complemental strand, 5124575 - 5124499
Alignment:
Q  255 taaagtataaacaaccatatatttgatataaaattaaacaaataactcaaaactcatggaacactcatacatcaaaa 331  Q
    |||||||||||||| |||||||||  ||||||||||||||||||||| |||||||||| |||| ||||| |||||||    
T  5124575 taaagtataaacaaacatatatttagtataaaattaaacaaataactaaaaactcatgaaacattcataaatcaaaa 5124499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 228101 - 228047
Alignment:
Q  257 aagtataaacaa-ccatatatttgatataaaattaaacaaataactcaaaactca 310  Q
    |||||||||||| |||||||||| ||||||||||||||||| |||||| ||||||    
T  228101 aagtataaacaaaccatatatttaatataaaattaaacaaacaactcacaactca 228047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 331
Target Start/End: Original strand, 30874658 - 30874734
Alignment:
Q  255 taaagtataaacaaccatatatttgatataaaattaaacaaataactcaaaactcatggaacactcatacatcaaaa 331  Q
    |||||||||||||| ||||||||| ||||||||||||| | || || |||||||| || ||||  |||| |||||||    
T  30874658 taaagtataaacaaacatatatttaatataaaattaaatatatcacccaaaactcgtgaaacatccataaatcaaaa 30874734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 30212920 - 30212964
Alignment:
Q  186 agtcaatcccggatagcggccgaccccaagagtgggatagcgggt 230  Q
    ||||||||| |||| |||||||||||||| ||||||||| |||||    
T  30212920 agtcaatcctggattgcggccgaccccaaaagtgggatatcgggt 30212964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 30496757 - 30496703
Alignment:
Q  280 atataaaattaaacaaataactcaaaactcatggaacactcatacatcaaaaaca 334  Q
    |||||||||||||||||| |||||||||||||| |||| ||| | || |||||||    
T  30496757 atataaaattaaacaaatgactcaaaactcatgaaacattcacatatgaaaaaca 30496703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University