View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6546_high_8 (Length: 413)

Name: NF6546_high_8
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6546_high_8
NF6546_high_8
[»] chr8 (5 HSPs)
chr8 (18-393)||(1768940-1769319)
chr8 (280-393)||(1801621-1801734)
chr8 (279-391)||(1784813-1784925)
chr8 (286-365)||(1772639-1772718)
chr8 (280-341)||(1777629-1777690)
[»] chr3 (2 HSPs)
chr3 (280-365)||(25727524-25727609)
chr3 (100-184)||(35558883-35558962)
[»] chr7 (1 HSPs)
chr7 (134-187)||(8633778-8633832)
[»] chr1 (2 HSPs)
chr1 (125-187)||(38902172-38902233)
chr1 (135-187)||(4552219-4552271)
[»] chr6 (1 HSPs)
chr6 (106-181)||(15064578-15064654)
[»] chr5 (2 HSPs)
chr5 (347-391)||(6807590-6807634)
chr5 (347-391)||(6814375-6814419)


Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 1769319 - 1768940
Alignment:
Q  18 acagagggagtaatagagatgctaaacatattttttaaaataaaaagccctaagggaggcattatttaagtaaccc-----tagaaatttatcttgaaaa 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||     |||||||||||||||||||    
T  1769319 acagatggagtaatagagatgctaaacatattttttaaaataaaaagccctaaggg-ggcattgtttaagtaacccataaatagaaatttatcttgaaaa 1769221  T
Q  113 tagaggtcaagcatatcaaaatcataacttcacaattttcaaggtaaaagttattagttttagatgcttaaacaagaaagaagactagtttcatatgtag 212  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1769220 tagaggtcaaacatatcaaaatcataacttcacaattttcaatgtaaaagttattagttttagatgcttaaacaagaaagaagactagtttcatatgtag 1769121  T
Q  213 tatataaatttgtagttttcatagacaagaaagactatcattgattttgaagatgttcaaacaggaaaagcactttgtgttgattcatggaggtatccat 312  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1769120 tatataaatttgcagttttcatagacaagaaagactatcattgattttgaagatgttcaaacaggaaaagcactttgtgttgattcatggaggcatccat 1769021  T
Q  313 ggtgcatggtgttggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcactagacatggctgcttgt 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1769020 ggtgcatggtgttggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcactagacatggctgcttgt 1768940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 393
Target Start/End: Complemental strand, 1801734 - 1801621
Alignment:
Q  280 aagcactttgtgttgattcatggaggtatccatggtgcatggtgttggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcactag 379  Q
    |||||||||||| |  ||||||||| | |||||||||||||||||||||||||||||||||||   || |||| |||||||||||| || ||| |  | |    
T  1801734 aagcactttgtgcttgttcatggagctttccatggtgcatggtgttggtataaggttgcaactatgcttaaattagctggtcataatgttacaactattg 1801635  T
Q  380 acatggctgcttgt 393  Q
    || |||||||||||    
T  1801634 acttggctgcttgt 1801621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 391
Target Start/End: Complemental strand, 1784925 - 1784813
Alignment:
Q  279 aaagcactttgtgttgattcatggaggtatccatggtgcatggtgttggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcacta 378  Q
    ||||||||||||| |  ||||||||| |  |||||||| |||||||||||||||||||||||||   || ||||||||||||||||| || ||| |  |     
T  1784925 aaagcactttgtgcttgttcatggagctggccatggtgaatggtgttggtataaggttgcaactatgcttaaatcagctggtcataatgttacaactatt 1784826  T
Q  379 gacatggctgctt 391  Q
    |||||||||||||    
T  1784825 gacatggctgctt 1784813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 365
Target Start/End: Complemental strand, 1772718 - 1772639
Alignment:
Q  286 tttgtgttgattcatggaggtatccatggtgcatggtgttggtataaggttgcaactgatctaaaatcagctggtcataa 365  Q
    |||||| |||||||||| || | ||||||||||||||||||||||||||| | ||||   || |||||||||||||||||    
T  1772718 tttgtgctgattcatggtggaagccatggtgcatggtgttggtataaggtggtaactatgcttaaatcagctggtcataa 1772639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 341
Target Start/End: Complemental strand, 1777690 - 1777629
Alignment:
Q  280 aagcactttgtgttgattcatggaggtatccatggtgcatggtgttggtataaggttgcaac 341  Q
    |||||||||||| |  ||||||||| |  |||||||||||||||||||||||||||||||||    
T  1777690 aagcactttgtgcttgttcatggagctggccatggtgcatggtgttggtataaggttgcaac 1777629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 365
Target Start/End: Original strand, 25727524 - 25727609
Alignment:
Q  280 aagcactttgtgttgattcatggaggtatccatggtgcatggtgttggtataaggttgcaactgatctaaaatcagctggtcataa 365  Q
    |||||||||||| |  ||||||||  | ||||||||||||||| |||||||||||||||||||   || |||||||||||||||||    
T  25727524 aagcactttgtgcttgttcatggacctttccatggtgcatggtcttggtataaggttgcaactatgctgaaatcagctggtcataa 25727609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 35558883 - 35558962
Alignment:
Q  100 tttatcttgaaaatagaggtcaagcatatcaaaatcataacttcacaattttcaaggtaaaagttattagttttagatgcttaaa 184  Q
    ||||||||||||||| | ||||| ||||| |||||||| ||     |||||| || ||||||||||||| |||||||||||||||    
T  35558883 tttatcttgaaaatacaagtcaaacatataaaaatcatgac-----aatttttaacgtaaaagttattaattttagatgcttaaa 35558962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 8633832 - 8633778
Alignment:
Q  134 tcataacttcacaattttcaaggtaaaagtta-ttagttttagatgcttaaacaa 187  Q
    |||||||| ||||||||||||||||||| ||| | | ||||||||||||||||||    
T  8633832 tcataactacacaattttcaaggtaaaacttactaaattttagatgcttaaacaa 8633778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 38902233 - 38902172
Alignment:
Q  125 atatcaaaatcataacttcacaattttcaaggtaaaagttattagttttagatgcttaaacaa 187  Q
    |||| ||| |||||| | |||||||||||| |||||||| |||| ||||||||||||||||||    
T  38902233 atataaaagtcataattacacaattttcaatgtaaaagt-attatttttagatgcttaaacaa 38902172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 4552219 - 4552271
Alignment:
Q  135 cataacttcacaattttcaaggtaaaagttattagttttagatgcttaaacaa 187  Q
    ||||||| |||||||||||| |||| | ||| || ||||||||||||||||||    
T  4552219 cataactacacaattttcaacgtaataattactatttttagatgcttaaacaa 4552271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 181
Target Start/End: Original strand, 15064578 - 15064654
Alignment:
Q  106 ttgaaaatagaggtcaagcatatc-aaaatcataacttcacaattttcaaggtaaaagttattagttttagatgctt 181  Q
    ||||||||| | ||||| |||||  |||||||||| | ||||||||||||  ||||||||| || ||||||||||||    
T  15064578 ttgaaaatacaagtcaaacatatgtaaaatcataaatacacaattttcaatataaaagttactacttttagatgctt 15064654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 391
Target Start/End: Complemental strand, 6807634 - 6807590
Alignment:
Q  347 taaaatcagctggtcataaagtcacagcactagacatggctgctt 391  Q
    ||||||| ||||| ||  |||||||||||||||||||||||||||    
T  6807634 taaaatctgctggacacgaagtcacagcactagacatggctgctt 6807590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 391
Target Start/End: Complemental strand, 6814419 - 6814375
Alignment:
Q  347 taaaatcagctggtcataaagtcacagcactagacatggctgctt 391  Q
    ||||||| ||||| ||  |||||||||||||||||||||||||||    
T  6814419 taaaatctgctggacacgaagtcacagcactagacatggctgctt 6814375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University