View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6546_high_9 (Length: 388)
Name: NF6546_high_9
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6546_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 21 - 379
Target Start/End: Original strand, 41090817 - 41091167
Alignment:
| Q |
21 |
agccagtcaatgaggtccagatgggtccagtttgaagccgagnnnnnnnnnnnnnnnnncaccatccaggtagctactttcacttgtatctgttgtttca |
120 |
Q |
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| T |
41090817 |
agccagtcaatgaggtccagatgggtccagtttgaagccgaggaagaagaagaaga---caccatccaggtagctactttcacttgtatctgttgtttca |
41090913 |
T |
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| Q |
121 |
tatgttgttgattctattttatcaatattatcaactcagtacttatttgcatccaataaaatcatttttaggaactaatctaaaagtgtgatttgattag |
220 |
Q |
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| T |
41090914 |
tatgttgttgattctattttatcaatattatcaactcagtacttatttgcatccaataaaatcatttttaggaactaatctaaaagtgtgatttgattag |
41091013 |
T |
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| Q |
221 |
atgtatgctttnnnnnnntttacaccatcagtttatataaattaaaaccttaaaatatcattaagatttaaatatttgttagagtatttttaggatttgt |
320 |
Q |
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| T |
41091014 |
atgtatgctttaaaaagttttacaccatcagtttatataaattaaaaccttaaaatatcattaagatttaaatatttgttagagtatttttaggatttgt |
41091113 |
T |
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| Q |
321 |
tagnnnnnnnnnctttcttattttaatttaaagataaagatatgtgcttgaagtataat |
379 |
Q |
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| T |
41091114 |
tagttttt-----tttcttattttaatttaaagataaagatatgtgcttgaattataat |
41091167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 41079749 - 41079826
Alignment:
| Q |
254 |
tatataaattaaaaccttaaaa-tatcattaagatttaaatat-------ttgttagagtatttttaggatttgttag |
323 |
Q |
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| T |
41079749 |
tatataaattaaatccttaaaggtatcattaagatttaaatttgaatattttgttagagtatttttaggatttgttag |
41079826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 198
Target Start/End: Original strand, 41079650 - 41079680
Alignment:
| Q |
168 |
tgcatccaataaaatcatttttaggaactaa |
198 |
Q |
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| T |
41079650 |
tgcatccaataaaatcatttttaggaactaa |
41079680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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