View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6546_low_12 (Length: 381)

Name: NF6546_low_12
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6546_low_12
NF6546_low_12
[»] chr1 (4 HSPs)
chr1 (1-363)||(21145137-21145499)
chr1 (1-32)||(22794105-22794136)
chr1 (1-36)||(40747800-40747835)
chr1 (1-33)||(42004974-42005006)
[»] chr7 (4 HSPs)
chr7 (1-52)||(43249974-43250025)
chr7 (1-52)||(11061103-11061154)
chr7 (1-34)||(13427575-13427608)
chr7 (1-38)||(44020970-44021007)
[»] chr3 (4 HSPs)
chr3 (1-52)||(24205068-24205119)
chr3 (1-32)||(12704684-12704715)
chr3 (1-52)||(25948914-25948965)
chr3 (1-35)||(15864831-15864865)
[»] chr4 (5 HSPs)
chr4 (1-51)||(32910533-32910583)
chr4 (1-52)||(21945484-21945535)
chr4 (1-35)||(20743305-20743339)
chr4 (3-52)||(46971928-46971977)
chr4 (1-33)||(37203264-37203296)
[»] chr2 (4 HSPs)
chr2 (1-51)||(11308031-11308080)
chr2 (1-52)||(30404877-30404928)
chr2 (1-34)||(25317136-25317169)
chr2 (1-34)||(30563408-30563441)
[»] scaffold0136 (1 HSPs)
scaffold0136 (1-52)||(3876-3927)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-52)||(225295-225346)
[»] chr8 (3 HSPs)
chr8 (1-52)||(44067497-44067548)
chr8 (1-51)||(28883905-28883955)
chr8 (1-33)||(30068055-30068087)
[»] chr5 (5 HSPs)
chr5 (1-52)||(21191083-21191134)
chr5 (1-34)||(38749590-38749623)
chr5 (1-33)||(4344742-4344774)
chr5 (1-53)||(19579681-19579733)
chr5 (3-35)||(42469219-42469251)
[»] chr6 (3 HSPs)
chr6 (5-38)||(34229449-34229482)
chr6 (1-33)||(28715295-28715327)
chr6 (1-33)||(34446565-34446597)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 21145499 - 21145137
Alignment:
Q  1 attatgtcatttttt-caaattattatccgtgtc-ggtatatcagtgtccgtgttagcatctagatggggcccactttttcatacactcattgaacacct 98  Q
    ||||||||||||||| |||||||||||||||||| || |||||||||||| ||||||| |||  |||||||| |||||||||||||||||| ||||||||    
T  21145499 attatgtcatttttttcaaattattatccgtgtcaggcatatcagtgtccatgttagcgtctgtatggggcc-actttttcatacactcatcgaacacct 21145401  T
Q  99 caatttatctatgtatctcttcctaatcctaccacatctatcaaa----taactcatttctttctcttcattttattttaaggtgtacacgcccccacat 194  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||     ||||||| || |||||||||    
T  21145400 caatttatctatatatctcttcctaatcctaccacatctatcaaaaaactaactcatttctttctcttcatttta-----aggtgtatacacccccacat 21145306  T
Q  195 ggggtgtacactaaactaaacaaaacatttttcttgttattttgatgctatgaaatggactgagaacagagaaaacaagtccaacaacagtgagtccata 294  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21145305 ggggtgtacactaaactaaactaaacatttttcttgttattttgatgctatgaaatggaatgagaacagagaaaacaagtccaacaacagtgagtccata 21145206  T
Q  295 aaagcagcagaaaagtggtaaattataaacatgagtagtaacgacgattggaacaaatgaagggtttgt 363  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  21145205 aaagcagcagaaaagtggtaaattataaacatgagtagtaatgacgtttggaacaaatgaagggtttgt 21145137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 22794105 - 22794136
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgt 32  Q
    ||||||||||||||||||||||||||||||||    
T  22794105 attatgtcattttttcaaattattatccgtgt 22794136  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 40747800 - 40747835
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtcggt 36  Q
    ||||||||||||| ||||||||||||||||||||||    
T  40747800 attatgtcattttctcaaattattatccgtgtcggt 40747835  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 42004974 - 42005006
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtc 33  Q
    ||||||||||||| |||||||||||||||||||    
T  42004974 attatgtcattttctcaaattattatccgtgtc 42005006  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 43250025 - 43249974
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtcggtatatcagtgtccgtgt 52  Q
    ||||||||||||| |||||||||||||||||||||  | |||||||||||||    
T  43250025 attatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgt 43249974  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 11061103 - 11061154
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtcggtatatcagtgtccgtgt 52  Q
    ||||||| ||||||||||||||||| | |||||||| | |||||||||||||    
T  11061103 attatgtgattttttcaaattattagctgtgtcggtgtgtcagtgtccgtgt 11061154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 13427608 - 13427575
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtcg 34  Q
    |||||||||||||||||||||||| |||||||||    
T  13427608 attatgtcattttttcaaattattttccgtgtcg 13427575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 44021007 - 44020970
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtcggtat 38  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  44021007 attatgtaattttttcaaattattatccgtgtctgtat 44020970  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24205068 - 24205119
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtcggtatatcagtgtccgtgt 52  Q
    ||||||||||||| |||||||||||||||||||||  | |||||||||||||    
T  24205068 attatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgt 24205119  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 12704684 - 12704715
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgt 32  Q
    ||||||||||||||||||||||||||||||||    
T  12704684 attatgtcattttttcaaattattatccgtgt 12704715  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 25948914 - 25948965
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtcggtatatcagtgtccgtgt 52  Q
    ||||||| ||||||||||||||||| |||| |||| || |||||||||||||    
T  25948914 attatgtgattttttcaaattattagccgtatcggcatgtcagtgtccgtgt 25948965  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 15864865 - 15864831
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtcgg 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  15864865 attatatcattttttcaaattattatccgtgtcgg 15864831  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32910583 - 32910533
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtcggtatatcagtgtccgtg 51  Q
    ||||||||||||| |||||||||||||||||||||||| || |||| ||||    
T  32910583 attatgtcattttctcaaattattatccgtgtcggtatgtcggtgttcgtg 32910533  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 21945535 - 21945484
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtcggtatatcagtgtccgtgt 52  Q
    ||||||||||||||||||||||||| | ||||||| || |||||||| ||||    
T  21945535 attatgtcattttttcaaattattagctgtgtcggcatgtcagtgtctgtgt 21945484  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 20743305 - 20743339
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtcgg 35  Q
    ||||||||||||| |||||||||||||||||||||    
T  20743305 attatgtcattttctcaaattattatccgtgtcgg 20743339  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 46971928 - 46971977
Alignment:
Q  3 tatgtcattttttcaaattattatccgtgtcggtatatcagtgtccgtgt 52  Q
    ||||||||| | |||||||||||||||||||||  ||||||| |||||||    
T  46971928 tatgtcattatctcaaattattatccgtgtcggagtatcagtatccgtgt 46971977  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 37203296 - 37203264
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtc 33  Q
    ||||||||||||||||||||||||| |||||||    
T  37203296 attatgtcattttttcaaattattagccgtgtc 37203264  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 11308031 - 11308080
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtcggtatatcagtgtccgtg 51  Q
    |||||||||||||||||||||| |||||||||||||||||| |||| ||||    
T  11308031 attatgtcattttttcaaatta-tatccgtgtcggtatatcggtgttcgtg 11308080  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 30404877 - 30404928
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtcggtatatcagtgtccgtgt 52  Q
    ||||||| ||||||||||||||||| |||||||||  | |||||||||||||    
T  30404877 attatgtgattttttcaaattattaaccgtgtcggcgtgtcagtgtccgtgt 30404928  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 25317169 - 25317136
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtcg 34  Q
    ||||||||||||||||||||||||||| ||||||    
T  25317169 attatgtcattttttcaaattattatcggtgtcg 25317136  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30563441 - 30563408
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtcg 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  30563441 attatgtcattttctcaaattattatccgtgtcg 30563408  T

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Target: scaffold0136 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 3876 - 3927
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtcggtatatcagtgtccgtgt 52  Q
    ||||||| ||||||| ||||||||| ||||||||| ||||||||||| ||||    
T  3876 attatgtgatttttttaaattattaaccgtgtcggcatatcagtgtctgtgt 3927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 225295 - 225346
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtcggtatatcagtgtccgtgt 52  Q
    ||||||||||||| ||||||||||||| |||||||  | |||||||||||||    
T  225295 attatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtccgtgt 225346  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 44067548 - 44067497
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtcggtatatcagtgtccgtgt 52  Q
    ||||||||||||| |||||||||||||||||||||  | |||||||| ||||    
T  44067548 attatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtcggtgt 44067497  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 28883905 - 28883955
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtcggtatatcagtgtccgtg 51  Q
    ||||||||||||| |||||||||||| |||| ||| || ||||||||||||    
T  28883905 attatgtcattttctcaaattattattcgtggcggcatgtcagtgtccgtg 28883955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 30068055 - 30068087
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtc 33  Q
    ||||||||||||| |||||||||||||||||||    
T  30068055 attatgtcattttctcaaattattatccgtgtc 30068087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 21191083 - 21191134
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtcggtatatcagtgtccgtgt 52  Q
    ||||||| ||||||||||||||||| | ||||||| || |||||||||||||    
T  21191083 attatgtgattttttcaaattattagctgtgtcggcatgtcagtgtccgtgt 21191134  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 38749590 - 38749623
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtcg 34  Q
    ||||||||||||||||||||||||||| ||||||    
T  38749590 attatgtcattttttcaaattattatcggtgtcg 38749623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4344774 - 4344742
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtc 33  Q
    ||||||||||||||||||||||||||| |||||    
T  4344774 attatgtcattttttcaaattattatcggtgtc 4344742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 19579733 - 19579681
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtcggtatatcagtgtccgtgtt 53  Q
    ||||||| ||||| ||||||||||| | |||||||  ||||||||||||||||    
T  19579733 attatgtgattttctcaaattattagctgtgtcggcgtatcagtgtccgtgtt 19579681  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 42469251 - 42469219
Alignment:
Q  3 tatgtcattttttcaaattattatccgtgtcgg 35  Q
    ||||||||||| |||||||||||||||||||||    
T  42469251 tatgtcattttctcaaattattatccgtgtcgg 42469219  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 34229482 - 34229449
Alignment:
Q  5 tgtcattttttcaaattattatccgtgtcggtat 38  Q
    |||||||||||||||||||||||| |||||||||    
T  34229482 tgtcattttttcaaattattatccatgtcggtat 34229449  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 28715327 - 28715295
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtc 33  Q
    ||||||||||||||||||||||||| |||||||    
T  28715327 attatgtcattttttcaaattattagccgtgtc 28715295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 34446597 - 34446565
Alignment:
Q  1 attatgtcattttttcaaattattatccgtgtc 33  Q
    ||||||||||||| |||||||||||||||||||    
T  34446597 attatgtcattttctcaaattattatccgtgtc 34446565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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