View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6546_low_13 (Length: 377)
Name: NF6546_low_13
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6546_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 30717081 - 30717430
Alignment:
| Q |
18 |
acaaatcacatccagtgcattaggtaatcctcatgctgggttgaaacccattcacagtaaatcctccatcaacagaaacaatctggccagtgatgtagga |
117 |
Q |
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| T |
30717081 |
acaaatcacatccagtgcattaggtaatcctcatgctgggttgaaacccattcacagtaaatcctccatcaacagaaacaatctggccagtgatgtagga |
30717180 |
T |
|
| Q |
118 |
agcagctggcaggcaaaggaaagtcaccaaggaagacacttcatgtgtttctgctatacgctttattggtgttcgagatagtacttgattcacaaactct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30717181 |
agcagctggcaggcaaaggaaagtcaccaaggaagacacttcatgtgtttctgctatacgctttattggtgttcgagatagtacttgattcacaaactct |
30717280 |
T |
|
| Q |
218 |
tcgttagcaattagctgtaagaaagacaaattagcaacacaagttatgaacaaaacattgccattaatagattaatactacagatgagcacactgacatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30717281 |
tcgttagcaattagctgtaagaaagacaaattagcaacacaagttatgaacaaaacattgccattaatagattaatactacagatgagcacactaacatt |
30717380 |
T |
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| Q |
318 |
acagtcacatatatgttttgaatcatcagcacttaatgaattagcctatg |
367 |
Q |
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| T |
30717381 |
acagtcacatatatgttttgaatcatcagcacttaatgaattagcctatg |
30717430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 48 - 242
Target Start/End: Original strand, 30698818 - 30699012
Alignment:
| Q |
48 |
tcatgctgggttgaaacccattcacagtaaatcctccatcaacagaaacaatctggccagtgatgtaggaagcagctggcaggcaaaggaaagtcaccaa |
147 |
Q |
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| T |
30698818 |
tcatgctgggttgaaatccattcgcagtaaatcctccatcaacagaaataacttgtccagtgatgtaagaagcagctggcagacaaaggaaagccaccaa |
30698917 |
T |
|
| Q |
148 |
ggaagacacttcatgtgtttctgctatacgctttattggtgttcgagatagtacttgattcacaaactcttcgttagcaattagctgtaagaaag |
242 |
Q |
| |
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| T |
30698918 |
ggaagacacttcatgtgtttctgctatccgttttatcggtgttcgagatagtacttcattcacaaactctttgttagcatataactgtaagaaag |
30699012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 65 - 353
Target Start/End: Original strand, 30705153 - 30705447
Alignment:
| Q |
65 |
ccattcacagtaaatcctccatcaacagaaacaatctggccagtgatgtaggaagcagctggcaggcaaaggaaagtcaccaaggaagacacttcatgtg |
164 |
Q |
| |
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||||| || ||||||||||| ||||| |||||| | || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30705153 |
ccatttacggtaaatcctccgtcaacggaaacagtttgtccagtgatgtaggaagcagctggcaggcaaaggaaagtcaccaaggcagacacttcatgtg |
30705252 |
T |
|
| Q |
165 |
tttctgctatacgctttattggtgttcgagatagtacttgattcacaaactcttcgttagcaattagctgtaagaaagacaa------attagcaacaca |
258 |
Q |
| |
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|||||||||| || ||||| ||||||||||||| ||||| || ||||||||||| ||||||||| | ||||||||||| || |||||||||| | |
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| T |
30705253 |
tttctgctatccgttttatcggtgttcgagataatacttcatccacaaactctttgttagcaataaactgtaagaaaggtaaagaattattagcaacata |
30705352 |
T |
|
| Q |
259 |
agttatgaacaaaacattgccattaatagattaata-ctacagatgagcacactgacattacagtcacatatatg-ttttgaatcatcagcacttaa |
353 |
Q |
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||||||| ||| |||||||||||| | |||||||| |||||||||| |||| ||||| |||||| ||| ||||| |||||| |||||| ||||||| |
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| T |
30705353 |
agttatgtacataacattgccatt--tggattaatagctacagatgatcacagtgacagtacagttacagatatgtttttgattcatcaacacttaa |
30705447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 228
Target Start/End: Original strand, 30708344 - 30708535
Alignment:
| Q |
37 |
ttaggtaatcctcatgctgggttgaaacccattcacagtaaatcctccatcaacagaaacaatctggccagtgatgtaggaagcagctggcaggcaaagg |
136 |
Q |
| |
|
|||| ||||||| |||||||| ||||| ||||| ||| | ||| |||||||||||||| | | || ||| |||||| |||||||||||||| ||||||| |
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| T |
30708344 |
ttagttaatccttatgctgggatgaaatccatttacattgaattttccatcaacagaaatagtttgtccaatgatgtgggaagcagctggcaagcaaagg |
30708443 |
T |
|
| Q |
137 |
aaagtcaccaaggaagacacttcatgtgtttctgctatacgctttattggtgttcgagatagtacttgattcacaaactcttcgttagcaat |
228 |
Q |
| |
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||||||||||| |||| || |||| ||||||||||| || | ||| ||||||| ||||| ||||| ||| ||| ||||| ||||||||| |
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| T |
30708444 |
aaagtcaccaattaagatacgtcatccgtttctgctatccgttgtatcggtgttctagataatacttcatttacagactctaagttagcaat |
30708535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 171
Target Start/End: Complemental strand, 30799974 - 30799850
Alignment:
| Q |
47 |
ctcatgctgggttgaaacccattcacagtaaatcctccatcaacagaaacaatctggccagtgatgtaggaagcagctggcaggcaaaggaaagtcacca |
146 |
Q |
| |
|
||||| ||||| || || ||||||||||| ||||||||||||||| ||| || || || |||||||| || ||||||||||| |||||||||| ||||| |
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| T |
30799974 |
ctcatactgggctggaatccattcacagttaatcctccatcaacacaaataacttgtccggtgatgtaagacgcagctggcagacaaaggaaagccacca |
30799875 |
T |
|
| Q |
147 |
aggaagacacttcatgtgtttctgc |
171 |
Q |
| |
|
| || || |||||||| | |||||| |
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| T |
30799874 |
acgatgaaacttcatgagattctgc |
30799850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 30791312 - 30791206
Alignment:
| Q |
41 |
gtaatcctcatgctgggttgaaacccattcacagtaaatcctccatcaacagaaacaatctggccagtgatgtaggaagcagctggcaggcaaaggaaag |
140 |
Q |
| |
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||||| ||||||||||||||||| ||| |||||| ||||| ||||||||| ||| || || ||||||||||| || ||||| || | ||||||||||| |
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| T |
30791312 |
gtaattctcatgctgggttgaaatccaaacacagttaatcccccatcaacacaaataacttgtccagtgatgtatgatgcagcaggtaagcaaaggaaag |
30791213 |
T |
|
| Q |
141 |
tcaccaa |
147 |
Q |
| |
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||||||| |
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| T |
30791212 |
tcaccaa |
30791206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 43183448 - 43183342
Alignment:
| Q |
41 |
gtaatcctcatgctgggttgaaacccattcacagtaaatcctccatcaacagaaacaatctggccagtgatgtaggaagcagctggcaggcaaaggaaag |
140 |
Q |
| |
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||||| ||||||||||||||||| ||| |||| | ||||| ||||||||| ||| || || ||| ||||||| || ||||| || | ||||||||||| |
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| T |
43183448 |
gtaattctcatgctgggttgaaatccaaacacaattaatcccccatcaacacaaataacttgtccaatgatgtaagatgcagcaggtaagcaaaggaaag |
43183349 |
T |
|
| Q |
141 |
tcaccaa |
147 |
Q |
| |
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||||||| |
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|
| T |
43183348 |
tcaccaa |
43183342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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