View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6546_low_14 (Length: 342)
Name: NF6546_low_14
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6546_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 15 - 332
Target Start/End: Original strand, 49815907 - 49816221
Alignment:
| Q |
15 |
tgtacagttggttaataatagttaggctatgagcatacaaaaataaaattagtgcccccagcagcacaagtcttcaatcagtgttgaaatgaacaaaagc |
114 |
Q |
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| T |
49815907 |
tgtacagttggttaataatagttaggctatgagcatacaaaaataaaattagtgcccccagcagcacaagtcttcaatcagtgttgaaatgaacaaaagc |
49816006 |
T |
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| Q |
115 |
aatcacatgtaattatcaagagagatagaaattgagcataagaagtgaccaccaaagaaggattccttgtttatttgtctccttggccctaaacatagtg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49816007 |
aatcacatgtaattatcaagagagatagaaattgagcataagaagtgaccaccaaagaaggattccttgtttatttgtctccttggccctaaacatagtg |
49816106 |
T |
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| Q |
215 |
agtgatatgcatcaattattgtttgtctacttccacccttcttcagctgtagttttcatttatcaaaattacaatttatgcccaatattataattttata |
314 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49816107 |
agtgatatgcatcaattattgtttgtctacttccacc---cttcagctgtagttttcatttatcaaaattacaatttatgcccaatattataattttata |
49816203 |
T |
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| Q |
315 |
aaaatgtactgatattta |
332 |
Q |
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|||||||||||||||||| |
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| T |
49816204 |
aaaatgtactgatattta |
49816221 |
T |
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