View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6546_low_16 (Length: 333)
Name: NF6546_low_16
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6546_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 207 - 314
Target Start/End: Original strand, 1960980 - 1961087
Alignment:
| Q |
207 |
caagtatccgacattaaatgttaattgtcatgaatatatatagcaaaaatgtgttgtttttgtcatttactataactataatgtacaggtgcaaatgcaa |
306 |
Q |
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| T |
1960980 |
caagtatccgacattaaatgttaattgtcatgaatatatatagcaaaaatgtgttgtttttgtcatttactataactattatgtacagttgcaaatgcaa |
1961079 |
T |
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| Q |
307 |
cttgtagc |
314 |
Q |
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| T |
1961080 |
cttgtagc |
1961087 |
T |
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Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 1960750 - 1960843
Alignment:
| Q |
11 |
atcatcaaaaatcaaattagtatgtactacttcggttcggataaatgtacttttttgcttatattaactccagagagataggagatcacaacacaccta |
109 |
Q |
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| T |
1960750 |
atcatcacaaatcaaattagtatgtactacttcgg-----atacatgtacttttttgcttatattaactccagagagataggagatcacaacacaccta |
1960843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 1960873 - 1960933
Alignment:
| Q |
110 |
tctattgataaaacactgtttgcttattcacgttgcgccacgtgatacaattctatctatc |
170 |
Q |
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| T |
1960873 |
tctattgataaaacactgtttgcttattcacattgcgccacgtgatacaattctatctatc |
1960933 |
T |
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