View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6546_low_18 (Length: 313)
Name: NF6546_low_18
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6546_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 91 - 294
Target Start/End: Original strand, 32804949 - 32805152
Alignment:
| Q |
91 |
gtgggaggaagaagaagtagtagaagaagtctctcaaaacaagtagaataagttactccaaatgcagaaaaagtttgtgttgagaaaccctaacatacag |
190 |
Q |
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| T |
32804949 |
gtgggatgaagaagaagtagtagaagtagtctctcaaaacaagtagaataagttactccaaatgcagaaaaagtttgtgttgagaaaccctaacatgcag |
32805048 |
T |
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| Q |
191 |
tggtttctttctctagttcccagatcataaaaagggtaaatggttgtgtcagaagtagctactagctaatgtttaacctcagtttaagcactactacaac |
290 |
Q |
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| T |
32805049 |
tggattctttctctagttcccagatcataaaaagggtaaatggttgtgtcagaagtagctactagctaatgtttaacctcagtttaagcactactacaac |
32805148 |
T |
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| Q |
291 |
ttac |
294 |
Q |
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|||| |
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| T |
32805149 |
ttac |
32805152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 147 - 251
Target Start/End: Original strand, 32801809 - 32801913
Alignment:
| Q |
147 |
tccaaatgcagaaaaagtttgtgttgagaaaccctaacatacagtggtttctttctctagttcccagatcataaaaagggtaaatggttgtgtcagaagt |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
32801809 |
tccaaatgcagaaaaagtttgtgttgagaaaccctaacatgcagtggtttctttctctagttcccagatcataaaaaggttaaatggatgtgtcagaaga |
32801908 |
T |
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| Q |
247 |
agcta |
251 |
Q |
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||||| |
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| T |
32801909 |
agcta |
32801913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 15307546 - 15307518
Alignment:
| Q |
37 |
gaaaacctatacctaaggttatttcctca |
65 |
Q |
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| T |
15307546 |
gaaaacctatacctaaggttatttcctca |
15307518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 9196092 - 9196152
Alignment:
| Q |
23 |
cgaacagcaaagatgaaaacctatacctaaggttatttcctcattcactcagtgaacgagc |
83 |
Q |
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| T |
9196092 |
cgaacagcaaagatgaaaacctatacctaaggttatttcctcattcactcattggacgagc |
9196152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 22108101 - 22108137
Alignment:
| Q |
32 |
aagatgaaaacctatacctaaggttatttcctcattc |
68 |
Q |
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| T |
22108101 |
aagaggaaaacctttacctaaggttatttcctcattc |
22108137 |
T |
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