View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6546_low_2 (Length: 518)

Name: NF6546_low_2
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6546_low_2
NF6546_low_2
[»] chr1 (9 HSPs)
chr1 (17-508)||(30620754-30621245)
chr1 (150-477)||(30616034-30616361)
chr1 (184-303)||(16183800-16183919)
chr1 (187-303)||(16175443-16175559)
chr1 (184-303)||(16223190-16223309)
chr1 (184-302)||(33108900-33109018)
chr1 (182-296)||(33114936-33115050)
chr1 (38-83)||(30616942-30616987)
chr1 (211-287)||(9700035-9700111)
[»] chr7 (2 HSPs)
chr7 (181-473)||(38883805-38884097)
chr7 (181-335)||(38892997-38893151)
[»] chr3 (1 HSPs)
chr3 (199-288)||(37316173-37316262)
[»] chr5 (1 HSPs)
chr5 (208-288)||(19207037-19207117)


Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 17 - 508
Target Start/End: Complemental strand, 30621245 - 30620754
Alignment:
Q  17 aaatattccatacaccgtttgattgatatgcacattgcacatgttagcatggattcaatgatcttttgtttataaaattaaggtacgtaatttgtttttt 116  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  30621245 aaatattgcatacaccgtttgattgatatgcacattgcacatgttagcatggatttaatgatcttttgtttataaaaataaggtacgtaatttgtttttt 30621146  T
Q  117 aagaggggaatatcattatttacaggcactaggaaaacattgaggcatggctaaggagaatctccaggtgctaaatgcactagatgtagcgaaaacacaa 216  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30621145 aagcggggaatatcattatttacaggcactaggaaaacattgaggcatggctaaggagaatctccaggtgctaaatgcactagatgtagcgaaaacacaa 30621046  T
Q  217 tggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattctgcatatcccttgtcacaaagctactcggtcgca 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30621045 tggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattctgcatatcccttgtcacaaagctactcggtcgca 30620946  T
Q  317 tttactaccatgtcgatggagctgaaaagccaggatcgttgccaccaaacgttgcagcagcagttaatggcgttgcttttgttgggacactttctggaca 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30620945 tttactaccatgtcgatggagctgaaaagccaggatcgttgccaccaaacgttgcagcagcagttaatggcgttgcttttgttgggacactttctggaca 30620846  T
Q  417 actctttttcggctggctcggtgacaaactaggccgtaaaaaagtctatggcatgactctagctgttatggttgtttgttccacaggttctg 508  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30620845 actcttcttcggctggctcggtgacaaactaggccgtaaaaaagtctatggcatgactctagctgttatggttgtttgttccataggttctg 30620754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 150 - 477
Target Start/End: Complemental strand, 30616361 - 30616034
Alignment:
Q  150 aaaacattgaggcatggctaaggagaatctccaggtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctgga 249  Q
    |||||||||||||||||| | ||||||||||  |||||||| ||||||||||||||| | ||||||||| |||||||| |||||||||| |||  |||||    
T  30616361 aaaacattgaggcatggcaagggagaatctcagggtgctaagtgcactagatgtagcaagaacacaatgttaccattttacagcaattgccattactgga 30616262  T
Q  250 atgggcttcttcaccgatgcatacgatctattctgcatatcccttgtcacaaagctactcggtcgcatttactaccatgtcgatggagctgaaaagccag 349  Q
     |||||||||||||| ||||||| |||||||| |||||||| ||||| |||| |||||||||||| || || ||| ||||||| ||||||||| |||| |    
T  30616261 ctgggcttcttcaccaatgcatatgatctattttgcatatcgcttgttacaaggctactcggtcgtatatattactatgtcgacggagctgaagagcctg 30616162  T
Q  350 gatcgttgccaccaaacgttgcagcagcagttaatggcgttgcttttgttgggacactttctggacaactctttttcggctggctcggtgacaaactagg 449  Q
    || | ||||||||||||||||||||| ||||||| ||| | ||||| ||||| ||| || | ||||||||||| ||||||||||||||||||||||||||    
T  30616161 gaacattgccaccaaacgttgcagcaacagttaacggcctcgctttagttggaacatttaccggacaactcttcttcggctggctcggtgacaaactagg 30616062  T
Q  450 ccgtaaaaaagtctatggcatgactcta 477  Q
    ||||| || ||||||||| || ||||||    
T  30616061 ccgtagaacagtctatggaatcactcta 30616034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 184 - 303
Target Start/End: Original strand, 16183800 - 16183919
Alignment:
Q  184 gtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattct 283  Q
    ||||| |||||||| ||||| || || || |||| ||||||||||||  ||||||| |||||||||||||| |||||||| |||||||| ||||| ||||    
T  16183800 gtgcttaatgcactcgatgtcgcaaagacgcaattgtaccatttcactacaattgtgatagctggaatgggattcttcactgatgcatatgatcttttct 16183899  T
Q  284 gcatatcccttgtcacaaag 303  Q
    |||| |||||||||||||||    
T  16183900 gcatttcccttgtcacaaag 16183919  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 187 - 303
Target Start/End: Complemental strand, 16175559 - 16175443
Alignment:
Q  187 ctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattctgca 286  Q
    ||||||||||||||||| || || ||||||| ||||||||||||  ||||||| |||||||||||||| |||||||| ||||| || ||||| |||||||    
T  16175559 ctaaatgcactagatgtggcaaagacacaattgtaccatttcactacaattgtgatagctggaatgggtttcttcactgatgcttatgatcttttctgca 16175460  T
Q  287 tatcccttgtcacaaag 303  Q
    | || ||||| ||||||    
T  16175459 tttctcttgttacaaag 16175443  T

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Target: chr1; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 184 - 303
Target Start/End: Original strand, 16223190 - 16223309
Alignment:
Q  184 gtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattct 283  Q
    |||||||||||||| ||||| || || ||||||| ||| || |||||  ||||||| || ||||||||||| |||||||| |||||||| ||||| ||||    
T  16223190 gtgctaaatgcacttgatgtggccaagacacaattgtatcacttcactacaattgtgattgctggaatgggattcttcactgatgcatatgatcttttct 16223289  T
Q  284 gcatatcccttgtcacaaag 303  Q
    |||| |||||||||||||||    
T  16223290 gcatttcccttgtcacaaag 16223309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 184 - 302
Target Start/End: Original strand, 33108900 - 33109018
Alignment:
Q  184 gtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattct 283  Q
    ||||| |||||||| ||||| ||||| ||||||  ||||||||||||||||||||| || ||||||||||| || ||||| ||||| || ||||| || |    
T  33108900 gtgcttaatgcactcgatgtggcgaagacacaaatgtaccatttcacagcaattgtgattgctggaatgggttttttcactgatgcctatgatctctttt 33108999  T
Q  284 gcatatcccttgtcacaaa 302  Q
    |||| ||||||||||||||    
T  33109000 gcatttcccttgtcacaaa 33109018  T

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Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 182 - 296
Target Start/End: Original strand, 33114936 - 33115050
Alignment:
Q  182 aggtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctatt 281  Q
    ||||||| |||||||| |||||||| || ||||| ||||| ||||| || ||||||||||| ||||||||||| || ||||| ||| | || ||||| ||    
T  33114936 aggtgcttaatgcacttgatgtagccaagacacagtggtatcattttactgcaattgtcattgctggaatgggttttttcactgattcctatgatctctt 33115035  T
Q  282 ctgcatatcccttgt 296  Q
    |||||| ||||||||    
T  33115036 ctgcatttcccttgt 33115050  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 30616987 - 30616942
Alignment:
Q  38 attgatatgcacattgcacatgttagcatggattcaatgatctttt 83  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  30616987 attgatatgcacattgcacatattagcatggattcaatgatctttt 30616942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 287
Target Start/End: Complemental strand, 9700111 - 9700035
Alignment:
Q  211 acacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattctgcat 287  Q
    ||||||||||||||| | ||||| || || || ||||| ||||| |||||||| ||||| || ||||| ||||||||    
T  9700111 acacaatggtaccatgtaacagctatagtaattgctggcatgggattcttcactgatgcctatgatctgttctgcat 9700035  T

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Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 181 - 473
Target Start/End: Original strand, 38883805 - 38884097
Alignment:
Q  181 caggtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctat 280  Q
    |||||||||||||| || ||||| || ||||||||||||||||||||||| |||||  |||||||||| ||||| ||||| || ||||| || ||||| |    
T  38883805 caggtgctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgatctgt 38883904  T
Q  281 tctgcatatcccttgtcacaaagctactcggtcgcatttactaccatgtcgatggagctgaaaagccaggatcgttgccaccaaacgttgcagcagcagt 380  Q
    ||||  |||||||||| |||||| | ||||||||||| |||||||| || ||||| ||||  ||||| ||  | ||||| || || ||  |||| || ||    
T  38883905 tctgtgtatcccttgttacaaagttgctcggtcgcatatactaccacgttgatggtgctgcgaagcccggtacattgcctcccaatgtatcagctgctgt 38884004  T
Q  381 taatggcgttgcttttgttgggacactttctggacaactctttttcggctggctcggtgacaaactaggccgtaaaaaagtctatggcatgac 473  Q
     ||||| || |||||   ||| |||||||| || ||||| || || |||||||| ||||| ||  | ||| | |||||||||||||| |||||    
T  38884005 gaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaaaagtctatggtatgac 38884097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 181 - 335
Target Start/End: Original strand, 38892997 - 38893151
Alignment:
Q  181 caggtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctat 280  Q
    ||||||||||||||||| ||||| |||||||| |||||||| || |||||||||||  |||| ||||||||||| ||||| || ||||| || ||||| |    
T  38892997 caggtgctaaatgcacttgatgtggcgaaaacgcaatggtatcacttcacagcaatcatcattgctggaatgggattctttactgatgcctatgatctgt 38893096  T
Q  281 tctgcatatcccttgtcacaaagctactcggtcgcatttactaccatgtcgatgg 335  Q
    |||||||||||||||| || ||| | || || ||||| || |||||||| |||||    
T  38893097 tctgcatatcccttgttaccaagttgctgggacgcatatattaccatgttgatgg 38893151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 288
Target Start/End: Complemental strand, 37316262 - 37316173
Alignment:
Q  199 gatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattctgcata 288  Q
    |||| ||| |||||||||||||||||||||||||| ||  | || ||||| ||||| |||||||| |||||||| || || |||||||||    
T  37316262 gatgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctgcata 37316173  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 19207037 - 19207117
Alignment:
Q  208 aaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattctgcata 288  Q
    |||||||||||||||| ||||||||| ||  | || ||||| ||||| |||| ||| |||||||| || || |||||||||    
T  19207037 aaaacacaatggtaccttttcacagccatcataattgctggtatgggattctgcacagatgcatatgaccttttctgcata 19207117  T

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