View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6546_low_24 (Length: 254)
Name: NF6546_low_24
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6546_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 22 - 239
Target Start/End: Complemental strand, 15351057 - 15350840
Alignment:
| Q |
22 |
ggtatgatataatataatacctggagaagaggatgagaagtatgagaagataagcagtgggggcagatgctaagacaacagtgtaagcaaaaaatgttct |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15351057 |
ggtatgatataatataatacctggagaagaggatgagaagtatgagaagataagcagtgggggcagatgctaagacaacagtgtaagcaaaaaatgttct |
15350958 |
T |
|
| Q |
122 |
tctcgttcttccttcgattcttgtggaccccacaatcaccaaagaatgtttcatccatcaacctctctagccatgcaggtttcatattcatcatgtccat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15350957 |
tctcgttcttccttcgattcttgtggaccccacaatcaccaaagaatgtttcatccatcaacctctctagccatgcaggtttcatattcatcatgtccat |
15350858 |
T |
|
| Q |
222 |
atccatgtccatgttcat |
239 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
15350857 |
atccatgtccatgttcat |
15350840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 76 - 204
Target Start/End: Original strand, 38713220 - 38713348
Alignment:
| Q |
76 |
cagtgggggcagatgctaagacaacagtgtaagcaaaaaatgttcttctcgttcttccttcgattcttgtggaccccacaatcaccaaagaatgtttcat |
175 |
Q |
| |
|
||||| ||||| ||| | ||||||||||| || |||| |||||||| |||||||||||| | |||| ||||||||||||| | ||||||||||| ||| |
|
|
| T |
38713220 |
cagtgagggcaaatggtgagacaacagtgcaaacaaaggatgttcttttcgttcttcctttggttctggtggaccccacaacccccaaagaatgtctcac |
38713319 |
T |
|
| Q |
176 |
ccatcaacctctctagccatgcaggtttc |
204 |
Q |
| |
|
|||| |||||||||| ||||||||||||| |
|
|
| T |
38713320 |
ccattaacctctctaaccatgcaggtttc |
38713348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University