View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6546_low_25 (Length: 250)
Name: NF6546_low_25
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6546_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 10855269 - 10855496
Alignment:
| Q |
5 |
tgcttagagtaacaaactgtaaagagttggtagaaatattttcagaggatgaaatacctgcagaaggagcaacaaaagagttaatgtttccttctctgac |
104 |
Q |
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| T |
10855269 |
tgcttagagtaacacgctgtaaagagttggtagaaatattttcagaggatgaaatacctgcagaaggagcaacaaaagagttaatgtttccttctctgac |
10855368 |
T |
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| Q |
105 |
ctcattgtacataataaaattgccagcgctcaaatacttttatcgtggtttacataagctagaatggcccatgctaaaagaattgtatgcatatcagtgt |
204 |
Q |
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| T |
10855369 |
ctcattgtacataataaaattgccagcgctcaaatacttttatcgtggtttacataagctagaatggcccatgctaaaagaattgcatgcatatcggtgt |
10855468 |
T |
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| Q |
205 |
aacttagtgatactcgaatgtcaagaag |
232 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
10855469 |
aacttagtgatactcgaatgtcaagaag |
10855496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 10887427 - 10887589
Alignment:
| Q |
5 |
tgcttagagtaacaaactgtaaagagttggtagaaatattttcagaggatgaaatacctgcagaaggagcaacaaaagagttaatgtttccttctctgac |
104 |
Q |
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||||||| | ||| |||||| | ||| |||||||||||||||| |||||||||||||||||||||||| || |||||| ||||||| ||||| |
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| T |
10887427 |
tgcttagtgcaacgaactgtgaggagctggtagaaatattttcgaaggatgaaatacctgcagaaggagaaataaaaga------gtttcctcaactgac |
10887520 |
T |
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| Q |
105 |
ctcattgtacataataaaattgccagcgctcaaatacttttatcgtggtttacataagctagaatggcc |
173 |
Q |
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| T |
10887521 |
cacaatgcacctaataaacttgccaaggctcaaatacttttatcctcgtctacataagctagaatggcc |
10887589 |
T |
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