View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6546_low_27 (Length: 250)
Name: NF6546_low_27
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6546_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 1769795 - 1769569
Alignment:
| Q |
13 |
tactataaaagcgttgagacaagtgtacactgtgctataacataaagtaagtttaacaaccattattattaatgaaaagtttaagtgacacttatttaga |
112 |
Q |
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| T |
1769795 |
tactataaaagcgttgagacaagtgtacactgtgctataacataaagtaagtttaacaaccattattattaatgaaaagtttaagtgacacttatttaga |
1769696 |
T |
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| Q |
113 |
cagccataaagtaggtttaacaaccattattaatg-aaaagtttaagtaacatttctttagccagccataaagtggttttagcaacgattactaatggga |
211 |
Q |
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| T |
1769695 |
cagccataaagtaggtttaacaaccattattaatgaaaaagtttaagtaacatttctttagccagccataaagtgattttagcaacgattagtaatggga |
1769596 |
T |
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| Q |
212 |
aatactccttccgtcccttaatgtagg |
238 |
Q |
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||||||| || |||| ||||||||||| |
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| T |
1769595 |
aatactcatttcgtctcttaatgtagg |
1769569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 212 - 247
Target Start/End: Original strand, 3237679 - 3237714
Alignment:
| Q |
212 |
aatactccttccgtcccttaatgtaggtacctatta |
247 |
Q |
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| T |
3237679 |
aatactccctccgtcccttaatgtaggtacctatta |
3237714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 246
Target Start/End: Original strand, 31819369 - 31819402
Alignment:
| Q |
213 |
atactccttccgtcccttaatgtaggtacctatt |
246 |
Q |
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| T |
31819369 |
atactccctccgtcccttaatgtaggtacctatt |
31819402 |
T |
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