View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6546_low_29 (Length: 243)
Name: NF6546_low_29
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6546_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 35346456 - 35346378
Alignment:
| Q |
1 |
tgtaaagacaattgccaatgtggctgcacaagattccattgcacatgcaggcatcgagccatgctcacaccttaagcaa |
79 |
Q |
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| T |
35346456 |
tgtaaagacaattgccaatgtggctgcacaagatcccattgcacatgcaggcatcgagccatgctcacaccttaagcaa |
35346378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 35335941 - 35335863
Alignment:
| Q |
1 |
tgtaaagacaattgccaatgtggctgcacaagattccattgcacatgcaggcatcgagccatgctcacaccttaagcaa |
79 |
Q |
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| T |
35335941 |
tgtaaagacaattgccaatgtggctacacaagatgccattacacatgcaggcaccgagccatgctcacaccttaagcaa |
35335863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 35356084 - 35356006
Alignment:
| Q |
1 |
tgtaaagacaattgccaatgtggctgcacaagattccattgcacatgcaggcatcgagccatgctcacaccttaagcaa |
79 |
Q |
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| T |
35356084 |
tgtaaagacaattgccaatgtggctgcacaagattctattacacatgcaggcactgaggtatgctcacaccttaagcaa |
35356006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 35364748 - 35364670
Alignment:
| Q |
1 |
tgtaaagacaattgccaatgtggctgcacaagattccattgcacatgcaggcatcgagccatgctcacaccttaagcaa |
79 |
Q |
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| T |
35364748 |
tgtaaagacaaatgccaatgtggctgcacaagatcccattacacatgcaagcaaggagccatgctcacaccttaagcaa |
35364670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 35374712 - 35374634
Alignment:
| Q |
1 |
tgtaaagacaattgccaatgtggctgcacaagattccattgcacatgcaggcatcgagccatgctcacaccttaagcaa |
79 |
Q |
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| T |
35374712 |
tgtaaagacaattgccaatgtggctgcacaagattctattacacatgcaggcactgaggtatgctcacaccttaagcaa |
35374634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 35351519 - 35351443
Alignment:
| Q |
3 |
taaagacaattgccaatgtggctgcacaagattccattgcacatgcaggcatcgagccatgctcacaccttaagcaa |
79 |
Q |
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| T |
35351519 |
taaaaacaattgccaatgtggctgcacaagattccattacacatgctagcacgtagccatgctcacacctttagcaa |
35351443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 35343214 - 35343289
Alignment:
| Q |
1 |
tgtaaagacaattgccaatgtggctgcacaagattccattgcacatgcaggcatcgagccatgctcacaccttaag |
76 |
Q |
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| T |
35343214 |
tgtaaagacaattgccaatgtggctgcccaatatgccattacacatgcaggcacgtagcaaagctcacaccttaag |
35343289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 35368560 - 35368494
Alignment:
| Q |
1 |
tgtaaagacaattgccaatgtggctgcacaagattccattgcacatgcaggcatcgagccatgctca |
67 |
Q |
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| T |
35368560 |
tgtaaagacaattgccaatgtggctgcccaatatgccattacacatgcaggcacgtagccatgctca |
35368494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 35371925 - 35371847
Alignment:
| Q |
1 |
tgtaaagacaattgccaatgtggctgcacaagattccattgcacatgcaggcatcgagccatgctcacaccttaagcaa |
79 |
Q |
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| T |
35371925 |
tgtaaagagaaatgccaatgatgctgcacaagatcccattacacatggaagcaaggagccatgctcacaccttaagcaa |
35371847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 35347890 - 35347970
Alignment:
| Q |
1 |
tgtaaagacaattgccaatgtggctgcacaagattcc--attgcacatgcaggcatcgagccatgctcacaccttaagcaa |
79 |
Q |
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|||| |||||||||||||||||||||||||||| || ||| |||||||||||| ||||||||||| ||||||||||| |
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| T |
35347890 |
tgtagagacaattgccaatgtggctgcacaagaccccatattacacatgcaggcacgtagccatgctcataccttaagcaa |
35347970 |
T |
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