View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6546_low_32 (Length: 233)
Name: NF6546_low_32
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6546_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 52824764 - 52824937
Alignment:
| Q |
1 |
ttgtgctcctctcaaccgggttgtgtacgttcttcataaatcagtgtaaaatattaaatatttctttcacattttgtaaataagatctttaattgaatta |
100 |
Q |
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| T |
52824764 |
ttgtgctcctctcaaccgggttgtgtacgttcttcataaatcagtgtaaaatattaaatatgtctttcacattttgtaaataagatctttaattgaatta |
52824863 |
T |
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| Q |
101 |
aataactcaacttgattgattaatttttgtttgcaacttgttaaaaggggtagtacgtcttgttaaatgggatt |
174 |
Q |
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| T |
52824864 |
aataactcaacttgattgattaatttttgtttgcaacttgttaaaaggggtagtacatcttgttaaatgagatt |
52824937 |
T |
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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 52824960 - 52825008
Alignment:
| Q |
174 |
tcgtgagaaggtttccaaacacatgtatacatcccacaattcatctcac |
222 |
Q |
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| T |
52824960 |
tcgtgagaaggtttccaaacacatgtatacatcccacaattcatatcac |
52825008 |
T |
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