View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6546_low_34 (Length: 221)
Name: NF6546_low_34
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6546_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 2e-66; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 80 - 219
Target Start/End: Original strand, 2693057 - 2693196
Alignment:
| Q |
80 |
tgtacttagttaatgctgtactattgttttgtgcaggacttcatggccggtaaactccctgccattcgaggtcaagtgccaacaatcagtgattgcgaga |
179 |
Q |
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| T |
2693057 |
tgtacttagttactgctgtactattgttttctgcaggacttcatggccggtaaactccctgccattcgaggtcaagtgccaacaatcagtgattgggaga |
2693156 |
T |
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| Q |
180 |
atcacctcacaacaatatttcctgaggtattgagacatgc |
219 |
Q |
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| T |
2693157 |
atcacctcacaacaatatttcctgaggtattgagacatgc |
2693196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 2693009 - 2693068
Alignment:
| Q |
3 |
ttttttcctttaatattgttggtgattaatttgtgaagtatgattaaatgtacttagtta |
62 |
Q |
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| T |
2693009 |
ttttttcctttaatattgttggtgattaatttgtgaagcatgattaaatgtacttagtta |
2693068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 207
Target Start/End: Original strand, 2685397 - 2685494
Alignment:
| Q |
110 |
gtgcaggacttcatggccggtaaactccctgccattcgaggtcaagtgccaacaatcagtgattgcgagaatcacctcacaacaatatttcctgaggt |
207 |
Q |
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| T |
2685397 |
gtgcaggacttcatggctggtaaactccctgcttttcagggtcaattgccaacactcagagattgggaaaatcatctctcaacaatatatcctgaggt |
2685494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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