View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6546_low_4 (Length: 514)

Name: NF6546_low_4
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6546_low_4
NF6546_low_4
[»] chr5 (6 HSPs)
chr5 (1-496)||(27276848-27277350)
chr5 (209-293)||(2609729-2609813)
chr5 (229-319)||(16811764-16811854)
chr5 (245-307)||(13660383-13660445)
chr5 (125-178)||(40028602-40028653)
chr5 (171-223)||(26271140-26271192)
[»] chr4 (8 HSPs)
chr4 (125-311)||(12215498-12215683)
chr4 (188-275)||(12881367-12881454)
chr4 (197-319)||(25982229-25982351)
chr4 (230-311)||(22296735-22296816)
chr4 (229-273)||(13208540-13208584)
chr4 (207-280)||(25940801-25940874)
chr4 (209-275)||(44811509-44811575)
chr4 (207-273)||(31996872-31996937)
[»] chr7 (3 HSPs)
chr7 (180-311)||(21546446-21546576)
chr7 (242-311)||(44192381-44192450)
chr7 (229-273)||(23804444-23804488)
[»] chr6 (5 HSPs)
chr6 (125-289)||(17351926-17352088)
chr6 (166-267)||(13248470-13248572)
chr6 (229-311)||(34451151-34451233)
chr6 (236-273)||(23070065-23070102)
chr6 (229-266)||(26270086-26270123)
[»] chr1 (2 HSPs)
chr1 (180-266)||(25426310-25426395)
chr1 (229-275)||(17617356-17617402)
[»] chr2 (1 HSPs)
chr2 (229-269)||(30699300-30699340)


Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 27276848 - 27277350
Alignment:
Q  1 ccaccatcggcttgtactgtgatctgatgagttttagggcatttcgatcgtatggtgtctccctcttaaaagacttgggtcagacccaaccagagccgga 100  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27276848 ccaccatcggcctgtactgtgatctggtgagttttagggcatttcgatcgtatggtgtctccctcttaaaagacttgggtcagacccaaccagagccgga 27276947  T
Q  101 gtggcctttatgccagtcgggaacacatgattttgcaataaaatacttcaaaaacacctatgatcattgtttggtttatgaagagctataattacgtgac 200  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  27276948 gtggcctttatgccagtccggaacacatgattttgtaataaaatacttcaaaaacacctatga--attgtttggtttatgaagagctataattacgtgac 27277045  T
Q  201 tcggtatgaaaacattacaaaattctggttaaaccatgagaaacttctctaaaactcctctttattgactcaatttgctatcaaaatgattgagaaacat 300  Q
    ||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27277046 tcgatatttaaacattacaaaattctggttaaaccatgagaaacttctctaaaactcctctttattgactcaatttgctatcaaaatgattgagaaacat 27277145  T
Q  301 actaaaaataatgcaagatcacctatcagcattacacctctaacatttggggatggttggaaggaaatattggtgtgcacttagatacta-tatttttac 399  Q
    ||||||||||||| || ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  27277146 actaaaaataatgaaacatcacttttcagcattacacctctaacatttggggatggttggaaggaaatattggtgtgcacttagatactattttttttac 27277245  T
Q  400 aaacattcttgttacttgtgataaaacttggtc--------ttctcaatgtaaattggttattcaaagtgctattatattttctgctatttggcgggata 491  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27277246 aaacattcttgttacttgtgataaaacttggtcttctcaagttctcaatgtaaattggttattcaaagtgctattatattttctgctatttggcgggata 27277345  T
Q  492 gtact 496  Q
    |||||    
T  27277346 gtact 27277350  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 293
Target Start/End: Original strand, 2609729 - 2609813
Alignment:
Q  209 aaaacattacaaaattctggttaaaccatgagaaacttctctaaaactcctctttattgactcaatttgctatcaaaatgattga 293  Q
    ||||||||||||||||    |||||  | ||| |||||||||||||||| |||||||||||||||||  ||| ||||||||||||    
T  2609729 aaaacattacaaaatttcccttaaattacgagcaacttctctaaaactcatctttattgactcaattaactaccaaaatgattga 2609813  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 319
Target Start/End: Original strand, 16811764 - 16811854
Alignment:
Q  229 ttaaaccatgagaaacttctctaaaactcctctttattgactcaatttgctatcaaaatgattgagaaacatactaaaaataatgcaagat 319  Q
    |||||||||||| || |||||||||| |||||| || |||||||| |  |||  ||||||||| | | ||||||||||||||||| |||||    
T  16811764 ttaaaccatgagcaatttctctaaaaatcctctataatgactcaaatgtctaataaaatgattaaaatacatactaaaaataatgtaagat 16811854  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 13660445 - 13660383
Alignment:
Q  245 ttctctaaaactcctctttattgactcaatttgctatcaaaatgattgagaaacatactaaaa 307  Q
    ||||||||||||| | || |||||||||| |  |||| ||||||||||| |||||||||||||    
T  13660445 ttctctaaaactctttttgattgactcaaatcactattaaaatgattgaaaaacatactaaaa 13660383  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 40028602 - 40028653
Alignment:
Q  125 acatgattttgcaataaaatacttcaaaaacacctatgatcattgtttggttta 178  Q
    ||||| |||| ||||| ||||||||||||||||||||||  |||||||||||||    
T  40028602 acatgcttttacaatacaatacttcaaaaacacctatga--attgtttggttta 40028653  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 26271140 - 26271192
Alignment:
Q  171 ttggtttatgaagagctataattacgtgactcggtatgaaaacattacaaaat 223  Q
    |||||||| ||| || || |||||| ||||||| |||||||||||||||||||    
T  26271140 ttggtttaggaaaagttaaaattacatgactcgatatgaaaacattacaaaat 26271192  T

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Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 125 - 311
Target Start/End: Complemental strand, 12215683 - 12215498
Alignment:
Q  125 acatgattttgcaataaaatacttcaaaaacacctatgatcattgtttggttta-tgaagagctataattacgtgactcggtatgaaaacattacaaaat 223  Q
    |||||||||| ||||| |||||||  |||||||||| ||  |||| |||||||| |||||| |||||||||| ||||||| |||||||||| ||||||||    
T  12215683 acatgatttttcaatagaatacttacaaaacacctaaga--attgattggtttagtgaagaactataattacatgactcgatatgaaaacaatacaaaat 12215586  T
Q  224 tctggttaaaccatgagaaacttctctaaaactcctctttattgactcaatttgctatcaaaatgattgagaaacatactaaaaataa 311  Q
    |    |||||  ||||| || ||||||||||||||||||||||||||||| |   ||  ||||||||||  ||||||||| |||||||    
T  12215585 ttcccttaaataatgagcaaattctctaaaactcctctttattgactcaaatctatactaaaatgattgtaaaacatacttaaaataa 12215498  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 275
Target Start/End: Original strand, 12881367 - 12881454
Alignment:
Q  188 ataattacgtgactcggtatgaaaacattacaaaattctggttaaaccatgagaaacttctctaaaactcctctttattgactcaatt 275  Q
    |||||||| ||||||| | | ||||||||| |||||     |||||||||||| |||||||||||||||| |||||||||||||||||    
T  12881367 ataattacatgactcgatttaaaaacattataaaatgtcccttaaaccatgagtaacttctctaaaactcttctttattgactcaatt 12881454  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 197 - 319
Target Start/End: Complemental strand, 25982351 - 25982229
Alignment:
Q  197 tgactcggtatgaaaacattacaaaattctggttaaaccatgagaaacttctctaaaactcctctttattgactcaatttgctatcaaaatgattgagaa 296  Q
    ||||||||| |||||| ||||||||||     |||||||||| ||||||||||| |||||| ||||||||| |||||||  |||| | ||||| ||| ||    
T  25982351 tgactcggtttgaaaatattacaaaatgtatcttaaaccatgcgaaacttctctcaaactcttctttattggctcaattatctattataatgactgaaaa 25982252  T
Q  297 acatactaaaaataatgcaagat 319  Q
    ||||  | ||||||||| |||||    
T  25982251 acatgttgaaaataatgtaagat 25982229  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 22296816 - 22296735
Alignment:
Q  230 taaaccatgagaaacttctctaaaactcctctttattgactcaatttgctatcaaaatgattgagaaacatactaaaaataa 311  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| |  |||  ||||||| ||  ||||||||| |||||||    
T  22296816 taaaccatgagcaacttctctaaaactcctctttattaactcaagtcactactaaaatgactggaaaacatactgaaaataa 22296735  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 13208584 - 13208540
Alignment:
Q  229 ttaaaccatgagaaacttctctaaaactcctctttattgactcaa 273  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||    
T  13208584 ttaaaccatgaggaacttctctaaaattcctctttattgactcaa 13208540  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 207 - 280
Target Start/End: Complemental strand, 25940874 - 25940801
Alignment:
Q  207 tgaaaacattacaaaattctggttaaaccatgagaaacttctctaaaactcctctttattgactcaatttgcta 280  Q
    ||||||||||| |||||   | |||||||||||  |||||| ||||||||| ||||||||||||||| ||||||    
T  25940874 tgaaaacattataaaatgtcgcttaaaccatgaacaacttcactaaaactcatctttattgactcaaattgcta 25940801  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 44811509 - 44811575
Alignment:
Q  209 aaaacattacaaaat-tctggttaaaccatgagaaacttctctaaaactcctctttattgactcaatt 275  Q
    ||||||||||||||| |||  |||||||||||||||||| |||  || ||||||||||||||||||||    
T  44811509 aaaacattacaaaatgtctc-ttaaaccatgagaaacttatcttcaagtcctctttattgactcaatt 44811575  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 31996872 - 31996937
Alignment:
Q  207 tgaaaacattacaaaattctggttaaaccatgagaaacttctctaaaactcctctttattgactcaa 273  Q
    |||||||||||||||||    |||| |||||||  ||||||||||||||| ||||||||||||||||    
T  31996872 tgaaaacattacaaaatgtacgttagaccatgaacaacttctctaaaact-ctctttattgactcaa 31996937  T

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Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 180 - 311
Target Start/End: Original strand, 21546446 - 21546576
Alignment:
Q  180 gaagagctataattacgtgactcggtatgaaaacattacaaaattctggttaaaccatgagaaacttctctaaaactcctctttattgactcaatttgct 279  Q
    ||||| ||| |||||| ||||| | |||||||||||||||||||     ||||||||||||||||||| || |||||||||||||||||||||| |  ||    
T  21546446 gaagaactagaattacatgacttgatatgaaaacattacaaaatgtcccttaaaccatgagaaacttccct-aaactcctctttattgactcaactcact 21546544  T
Q  280 atcaaaatgattgagaaacatactaaaaataa 311  Q
    |  ||||||| ||| |||| |||| |||||||    
T  21546545 actaaaatgactgaaaaacttactgaaaataa 21546576  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 311
Target Start/End: Complemental strand, 44192450 - 44192381
Alignment:
Q  242 aacttctctaaaactcctctttattgactcaatttgctatcaaaatgattgagaaacatactaaaaataa 311  Q
    |||||||| ||||||| ||||||||||||||| ||||||  ||||||||||| |||||| || |||||||    
T  44192450 aacttctcaaaaactcttctttattgactcaaattgctaataaaatgattgaaaaacatgctgaaaataa 44192381  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 23804444 - 23804488
Alignment:
Q  229 ttaaaccatgagaaacttctctaaaactcctctttattgactcaa 273  Q
    |||||||||||| ||||||||||||| |||||||| |||||||||    
T  23804444 ttaaaccatgagcaacttctctaaaaatcctcttttttgactcaa 23804488  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 125 - 289
Target Start/End: Complemental strand, 17352088 - 17351926
Alignment:
Q  125 acatgattttgcaataaaatacttcaaaaacacctatgatcattgtttggtttatg-aagagctataattacgtgactcggtatgaaaacattacaaaat 223  Q
    |||||||||| || |||||||||||||||||||||||||  |||||||  |||| | |||| ||  |||||  ||| ||| ||| |||| ||||||||||    
T  17352088 acatgatttt-cactaaaatacttcaaaaacacctatga--attgtttcatttagggaagaactggaattagatgattcgatataaaaatattacaaaat 17351992  T
Q  224 tctggttaaaccatgagaaacttctctaaaactcctctttattgactcaatttgctatcaaaatga 289  Q
          ||||||||||| ||||||||||||| |||||||||||||||||| ||| ||| |||||||    
T  17351991 atcccctaaaccatgagcaacttctctaaaattcctctttattgactcaaattgttattaaaatga 17351926  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 166 - 267
Target Start/End: Complemental strand, 13248572 - 13248470
Alignment:
Q  166 attgtttggtttatg-aagagctataattacgtgactcggtatgaaaacattacaaaat-tctggttaaaccatgagaaacttctctaaaactcctcttt 263  Q
    ||||||||||||||| ||||  || |||||| ||||| | ||||||||||||||||| | |||  ||||  ||||||||||||||||||||||||| |||    
T  13248572 attgtttggtttatggaagaagtagaattacatgacttgatatgaaaacattacaaattgtctc-ttaattcatgagaaacttctctaaaactcctattt 13248474  T
Q  264 attg 267  Q
    ||||    
T  13248473 attg 13248470  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 34451233 - 34451151
Alignment:
Q  229 ttaaaccatgagaaacttctctaaaactcctctttattgactcaatttgctatcaaaatgattgagaaacatactaaaaataa 311  Q
    ||||| || ||| |||||||||||||||||| ||||||||||| |||| |||| ||| ||| | | ||||||| | |||||||    
T  34451233 ttaaatcaagagcaacttctctaaaactcctttttattgactcgattttctattaaattgactaaaaaacatattgaaaataa 34451151  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 273
Target Start/End: Original strand, 23070065 - 23070102
Alignment:
Q  236 atgagaaacttctctaaaactcctctttattgactcaa 273  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  23070065 atgagcaacttctctaaaactcctctttgttgactcaa 23070102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 26270123 - 26270086
Alignment:
Q  229 ttaaaccatgagaaacttctctaaaactcctctttatt 266  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  26270123 ttaaaccaagagcaacttctctaaaactcctctttatt 26270086  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 266
Target Start/End: Original strand, 25426310 - 25426395
Alignment:
Q  180 gaagagctataattacgtgactcggtatgaaaacattacaaaattctggttaaaccatgagaaacttctctaaaactcctctttatt 266  Q
    ||||| |||||||||| ||||| | ||||||||||| |||||||     |||||||||||| ||||||| |||||||||||||||||    
T  25426310 gaagaactataattacatgacttgatatgaaaacat-acaaaatgtcccttaaaccatgagcaacttctataaaactcctctttatt 25426395  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 17617402 - 17617356
Alignment:
Q  229 ttaaaccatgagaaacttctctaaaactcctctttattgactcaatt 275  Q
    ||||||||||||||| ||||||||||||||||| || ||||| ||||    
T  17617402 ttaaaccatgagaaaattctctaaaactcctctataatgactaaatt 17617356  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 30699300 - 30699340
Alignment:
Q  229 ttaaaccatgagaaacttctctaaaactcctctttattgac 269  Q
    |||||||||||| ||||||||||||||| ||||||||||||    
T  30699300 ttaaaccatgagcaacttctctaaaactactctttattgac 30699340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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