View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6546_low_6 (Length: 484)
Name: NF6546_low_6
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6546_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 52710026 - 52709553
Alignment:
| Q |
1 |
attaggaggcaagcaaataatattgttcatttattaaacatgg-gacattatgtcatgctaattcacatgtaaataatggtggagtatatgacatctcat |
99 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52710026 |
attaggaggcaagtaaataatgttgttcatttattaaacatggcgacactatgtcatgctaattcacatgtaaataatgggggagtatatgacatctcat |
52709927 |
T |
|
| Q |
100 |
tttgccttgaaattttttatcaacgaaatacatatggaatcaaaatatatggaaggatgaaaacttaccatgcagcgtatgaactctgatcctctatagt |
199 |
Q |
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|
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
52709926 |
tttgccttgaaaatttttatcaacgaaataaatatggaatcaaaatatatggaaggatgaaaacttaccatgtagcatatgaactctgatcctctatagt |
52709827 |
T |
|
| Q |
200 |
gtatgtttccactcaactctgaaaagctatctctttagttactttgatcttcctgtttgtgagaaaccatttttcattagtaaaatgctagtagtttata |
299 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52709826 |
gtttgtttcaactcaactctgaaaagctatctctttagttactttgatcttcctgtttgtgagaaaccatttttcattagtaaaatgctagtagtttata |
52709727 |
T |
|
| Q |
300 |
gtagtacattttcattgcaattaaagcttttcannnnnnnagaaacagctatttgggattacagcgattctatttttggaaaatctatttgaattatagc |
399 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52709726 |
gtagtacattttcattgcaattacagcttttcatttttttagaaacagctatttgggattacagcgattctatttttggaaaatctatttgaattatagc |
52709627 |
T |
|
| Q |
400 |
tagttcataatgtgtgacagagctgttgatggagattaaatagaaagacattaattcattatctaccatccttt |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52709626 |
tagttcataatgtgtgacagagctgttgatggagattaaatagaaagacattaattcattatctaccatccttt |
52709553 |
T |
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