View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6546_low_9 (Length: 430)
Name: NF6546_low_9
Description: NF6546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6546_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 12 - 412
Target Start/End: Complemental strand, 3743615 - 3743207
Alignment:
| Q |
12 |
atgaatttcaagaggactatgatgactgaaaaagatgtaccgagagttctcataagaggaggttaggacggtatcgagggaattcaaaaatgcttagagt |
111 |
Q |
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| T |
3743615 |
atgaatttctagaggactatgattactgaaaaagatgtaccgagagttctcataagaggaggttaggacggtatcgagggaattaaaaaatgcttagagt |
3743516 |
T |
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| Q |
112 |
ctcaatgattgattatattttggtctcgttaaataattttgggaagaaaatgaaatttgattttttgcaaataatggcaaaatttcatgcaaaaggtcag |
211 |
Q |
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| T |
3743515 |
ctcaatgattgattaaattttggtctcgttaaataattttgggaagaaaatgaaatttgatattttgcaaataatggcaaaatttcatgcaaaaggtc-g |
3743417 |
T |
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| Q |
212 |
gtggtttaataaactatctgttcgtttattgttttgatttcaaaaaagaaaatttgtcagattttcgtcctatatctctaattggatgcatttataaggc |
311 |
Q |
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| T |
3743416 |
gtggtttaataaactatttgttcgtttattgttttgatttcaaaaaagaaaattagtcagattttcgtcctatatctctaattggatgcatttataaggc |
3743317 |
T |
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| Q |
312 |
tatctcaaaa---------aacaatcaacatattgaaacaagtagttgggtggttattatagaaattagtcataacttactcatggaagacaaatgttgc |
402 |
Q |
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| T |
3743316 |
tatctcaaaagtattggtcaacaatcaacatattgaaacaagtagttgggtggttattatagaaattagtcataacttactcatggaagacaaatgttgc |
3743217 |
T |
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| Q |
403 |
atggtatact |
412 |
Q |
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| T |
3743216 |
atggtatact |
3743207 |
T |
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