View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6547_high_11 (Length: 429)

Name: NF6547_high_11
Description: NF6547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6547_high_11
NF6547_high_11
[»] chr4 (1 HSPs)
chr4 (19-416)||(40823474-40823875)
[»] chr7 (26 HSPs)
chr7 (17-416)||(20289276-20289672)
chr7 (106-416)||(20284965-20285273)
chr7 (109-266)||(20062299-20062453)
chr7 (111-242)||(20279697-20279828)
chr7 (112-263)||(20303876-20304027)
chr7 (106-263)||(20294835-20294992)
chr7 (106-266)||(20231732-20231892)
chr7 (109-263)||(20167817-20167971)
chr7 (106-260)||(20243810-20243964)
chr7 (106-266)||(20264191-20264351)
chr7 (106-263)||(20273984-20274141)
chr7 (329-409)||(20062518-20062598)
chr7 (333-409)||(20303721-20303797)
chr7 (147-266)||(19939307-19939426)
chr7 (147-266)||(19970446-19970565)
chr7 (308-416)||(20168016-20168124)
chr7 (334-416)||(20264026-20264108)
chr7 (334-416)||(20231567-20231649)
chr7 (112-266)||(20005104-20005258)
chr7 (334-416)||(20243632-20243714)
chr7 (327-416)||(20279535-20279624)
chr7 (333-416)||(20005334-20005417)
chr7 (333-416)||(20294682-20294765)
chr7 (327-409)||(20273838-20273920)
chr7 (371-416)||(19939131-19939176)
chr7 (371-416)||(19970270-19970315)
[»] chr8 (2 HSPs)
chr8 (193-275)||(4159639-4159721)
chr8 (180-266)||(4130262-4130348)
[»] chr2 (5 HSPs)
chr2 (192-260)||(2716872-2716940)
chr2 (192-260)||(2723495-2723563)
chr2 (192-260)||(2745325-2745393)
chr2 (192-232)||(2704305-2704345)
chr2 (192-263)||(2711955-2712026)
[»] chr5 (1 HSPs)
chr5 (178-230)||(28859769-28859821)


Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 416
Target Start/End: Original strand, 40823474 - 40823875
Alignment:
Q  19 taattaaataaaaaagttcatacatttggaagttgtatcaacaaaaagcaaaagagagatcataataagtnnnnnnnnnnn----gaattattgaggctt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||    
T  40823474 taattaaataaaaaagttcatacatttggaagttgtatcaacaaaaagcaaaagagagatcataataagtaaaaaaaaaaaaaaagaattattgaggctt 40823573  T
Q  115 acaaatcctaaaagggtcagtgcatgctcattgtcataaaagcttgagtttcttctcctgctaataatctctagtatcaaaacaccaaagctaaagacat 214  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  40823574 acaaatcctaaaagggtcagtgcatgctcattgtcataaaatcttgagtttcttctcccactaataatctctagtatcaaaacaccaaagctaaagacat 40823673  T
Q  215 ctgatttctctgaaaacagtccttgcatcgcatattcaggggacatataaccgctgtattttttatgtaataaattatacgagaagtattttactataaa 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40823674 ctgatttctctgaaaacagtccttgcatcgcatattcaggggacatataaccgctgcattttttatgtaataaattatacgagaagtattttactataaa 40823773  T
Q  315 attagatgaggaaggcacacttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccataccaaagtctgata 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40823774 attagatgaggaaggcacacttactaagttccgacaaccctaatagtattggtcttatcttctctccctccaaagattctagccataccaaagtctgata 40823873  T
Q  415 tt 416  Q
    ||    
T  40823874 tt 40823875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 416
Target Start/End: Complemental strand, 20289672 - 20289276
Alignment:
Q  17 attaattaaataaaaaagttcatacatttggaagttgtatcaacaaaaagcaaaagagagatcataataagtnnnnnnnnnnngaattattgaggcttac 116  Q
    ||||| ||||||||||| |||| ||||||| |||||||||| |||||||| ||||||||  ||||| |||||           ||||||| |||||||||    
T  20289672 attaagtaaataaaaaatttcagacatttgtaagttgtatcgacaaaaaggaaaagaga--tcatattaagtaaaagaaaag-gaattatcgaggcttac 20289576  T
Q  117 aaatcctaaaagggtcagtgcatgctcattgtcataaaagcttgagtttcttctcctgctaataatctctagtatcaaaacaccaaagctaaagacatct 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  20289575 aaatcctaaaagggtcagtgcatgctcattgtcataaaagcttgagtttcttctcccgctaataatctctagtaacaaaacaccaaagctaaagacatct 20289476  T
Q  217 gatttctctgaaaacagtccttgcatcgcatattcaggggacatataaccgctgtattttttatgtaataaattatacgagaagtattttactataaaat 316  Q
    |||||||||||||||||||||||||| || ||||| || || |||||||| ||| ||||||||||||| | ||||| |   |||||||||||||||||||    
T  20289475 gatttctctgaaaacagtccttgcattgcgtattcgggagatatataaccactgcattttttatgtaacatattattctccaagtattttactataaaat 20289376  T
Q  317 tagatgaggaaggcacacttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccataccaaagtctgatatt 416  Q
    | ||  ||||||||||||||||||||||||||||||||| ||||||||  |  |||||||||||||| | ||||||||||||||||||||||||||||||    
T  20289375 tggacaaggaaggcacacttactaagttccgacaacccttatagtattttctgtatcttctctcccttcgaagattctagccataccaaagtctgatatt 20289276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 106 - 416
Target Start/End: Complemental strand, 20285273 - 20284965
Alignment:
Q  106 ttgaggcttacaaatcctaaaagggtcagtgcatgctcattgtcataaaagcttgagtttcttctcctgctaataatctctagtatcaaaacaccaaagc 205  Q
    ||||||| |||||||||||||||| ||||   |||||||||||||||||| | |||||| |||||||   ||| |||||||||||||||||||||||| |    
T  20285273 ttgaggcgtacaaatcctaaaaggctcaga--atgctcattgtcataaaaacatgagttccttctcccagtaacaatctctagtatcaaaacaccaaaac 20285176  T
Q  206 taaagacatctgatttctctgaaaacagtccttgcatcgcatattcaggggacatataaccgctgtattttttatgtaataaattatacgagaagtatt- 304  Q
    |||| | |||||||||||||||||| | ||||||||| |||||||| || |||||||| || ||| | ||   || ||| ||||||| |   || ||||     
T  20285175 taaaaaaatctgatttctctgaaaataatccttgcattgcatattccggagacatatagccactgca-ttaaaatataaaaaattattctttaattatta 20285077  T
Q  305 ttactataaaattagatgaggaaggcacacttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccatacca 404  Q
     ||||| || ||| ||| || || | | ||||||||||||||||| | |||  |||||||||||| |||||||| |||||||||||||||| ||||||||    
T  20285076 ctactaaaatattggataagaaaaggatacttactaagttccgactatccttctagtattggcctgatcttctccccctccaaagattctaaccatacca 20284977  T
Q  405 aagtctgatatt 416  Q
    ||||||||||||    
T  20284976 aagtctgatatt 20284965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 109 - 266
Target Start/End: Original strand, 20062299 - 20062453
Alignment:
Q  109 aggcttacaaatcctaaaagggtcagtgcatgctcattgtcataaaagcttgagtttcttctcctgctaataatctctagtatcaaaacaccaaagctaa 208  Q
    |||||||||||||||||||| ||||| |    ||||||||||||||||||||||||||||||||   ||| |||||| ||||||||||||||||||||||    
T  20062299 aggcttacaaatcctaaaagagtcagagt---ctcattgtcataaaagcttgagtttcttctcccagtaagaatctcaagtatcaaaacaccaaagctaa 20062395  T
Q  209 agacatctgatttctctgaaaacagtccttgcatcgcatattcaggggacatataacc 266  Q
    | |||||||||||||||||||| ||||||||||| || |||||||| |||||||||||    
T  20062396 aaacatctgatttctctgaaaaaagtccttgcattgcgtattcaggagacatataacc 20062453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 20279828 - 20279697
Alignment:
Q  111 gcttacaaatcctaaaagggtcagtgcatgctcattgtcataaaagcttgagtttcttctcctgctaataatctctagtatcaaaacaccaaagctaaag 210  Q
    |||||||||||||| |||  |||| ||||||||||||||||||||||||||||||||||||| |||||  |||||||||| ||||||||||||||||||     
T  20279828 gcttacaaatcctacaagactcagagcatgctcattgtcataaaagcttgagtttcttctcccgctaacgatctctagtaccaaaacaccaaagctaaaa 20279729  T
Q  211 acatctgatttctctgaaaacagtccttgcat 242  Q
    |||||||||||||||||||| |||||||||||    
T  20279728 acatctgatttctctgaaaaaagtccttgcat 20279697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 112 - 263
Target Start/End: Complemental strand, 20304027 - 20303876
Alignment:
Q  112 cttacaaatcctaaaagggtcagtgcatgctcattgtcataaaagcttgagtttcttctcctgctaataatctctagtatcaaaacaccaaagctaaaga 211  Q
    ||||||||||||| |||  || |||||||||||||||||||||||||||||||||||||||  ||||  |||||||| ||||| |||||||||||||| |    
T  20304027 cttacaaatcctagaagactcggtgcatgctcattgtcataaaagcttgagtttcttctcccactaacgatctctagaatcaatacaccaaagctaaaaa 20303928  T
Q  212 catctgatttctctgaaaacagtccttgcatcgcatattcaggggacatata 263  Q
    ||||||||||||||||||| |||||| |||| || |||||||| ||||||||    
T  20303927 catctgatttctctgaaaaaagtcctcgcattgcgtattcaggagacatata 20303876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 106 - 263
Target Start/End: Complemental strand, 20294992 - 20294835
Alignment:
Q  106 ttgaggcttacaaatcctaaaagggtcagtgcatgctcattgtcataaaagcttgagtttcttctcctgctaataatctctagtatcaaaacaccaaagc 205  Q
    ||||||||||||||||||| ||||||||| | || ||||  |||||||||  ||||||| ||||||| | ||| ||||||||| ||||||||||||||||    
T  20294992 ttgaggcttacaaatcctataagggtcagagaattctcaaagtcataaaaaattgagttccttctcccggtaacaatctctagcatcaaaacaccaaagc 20294893  T
Q  206 taaagacatctgatttctctgaaaacagtccttgcatcgcatattcaggggacatata 263  Q
    |||| |||||||||||||||||||| | ||||||||| ||||||||||| ||||||||    
T  20294892 taaaaacatctgatttctctgaaaataatccttgcattgcatattcaggagacatata 20294835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 106 - 266
Target Start/End: Complemental strand, 20231892 - 20231732
Alignment:
Q  106 ttgaggcttacaaatcctaaaagggtcagtgcatgctcattgtcataaaagcttgagtttcttctcctgctaataatctctagtatcaaaacaccaaagc 205  Q
    |||||||||||| ||||||||||| ||||   |||| ||| ||||||||| |||||||||||||| | | ||| ||||||||||| ||| ||||||||||    
T  20231892 ttgaggcttacatatcctaaaaggctcagattatgcacatcgtcataaaaacttgagtttcttcttccgataacaatctctagtagcaatacaccaaagc 20231793  T
Q  206 taaagacatctgatttctctgaaaacagtccttgcatcgcatattcaggggacatataacc 266  Q
    |||| |||||||||||||||||||| | ||||||||| ||||||||||| ||||| |||||    
T  20231792 taaaaacatctgatttctctgaaaataatccttgcattgcatattcaggagacatgtaacc 20231732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 109 - 263
Target Start/End: Original strand, 20167817 - 20167971
Alignment:
Q  109 aggcttacaaatcctaaaagggtcagtgcatgctcattgtcataaaagcttgagtttcttctcctgctaataatctctagtatcaaaacaccaaagctaa 208  Q
    ||||||||| |||| |||||| |||| ||||| ||||| || ||||| |||||||| ||||||| | ||| |||||||| ||||||||||||||||||||    
T  20167817 aggcttacatatcccaaaaggctcagagcatgttcattttcgtaaaaacttgagttccttctcccggtaacaatctctaatatcaaaacaccaaagctaa 20167916  T
Q  209 agacatctgatttctctgaaaacagtccttgcatcgcatattcaggggacatata 263  Q
    | |||||||||||||||||||| ||||||||||| ||||| || || ||||||||    
T  20167917 acacatctgatttctctgaaaatagtccttgcattgcatactcgggagacatata 20167971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 106 - 260
Target Start/End: Complemental strand, 20243964 - 20243810
Alignment:
Q  106 ttgaggcttacaaatcctaaaagggtcagtgcatgctcattgtcataaaagcttgagtttcttctcctgctaataatctctagtatcaaaacaccaaagc 205  Q
    |||||||||||| ||||||||||| | ||   ||||||||  |||||||| |||||||||||||| | | ||| ||||||||||| ||| ||||||||||    
T  20243964 ttgaggcttacatatcctaaaaggctaagattatgctcatcatcataaaaacttgagtttcttcttccgataacaatctctagtagcaatacaccaaagc 20243865  T
Q  206 taaagacatctgatttctctgaaaacagtccttgcatcgcatattcaggggacat 260  Q
    |||| |||||||||||||||||||| | ||||||||| ||||||||||| |||||    
T  20243864 taaaaacatctgatttctctgaaaataatccttgcattgcatattcaggagacat 20243810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 106 - 266
Target Start/End: Complemental strand, 20264351 - 20264191
Alignment:
Q  106 ttgaggcttacaaatcctaaaagggtcagtgcatgctcattgtcataaaagcttgagtttcttctcctgctaataatctctagtatcaaaacaccaaagc 205  Q
    |||||||||||||||||||||||  | ||   ||||||||  |||||||| |||||||||||||||| | ||| ||||||||||| ||| ||||||||||    
T  20264351 ttgaggcttacaaatcctaaaagactaagattatgctcatcatcataaaaacttgagtttcttctcccgataacaatctctagtagcaatacaccaaagc 20264252  T
Q  206 taaagacatctgatttctctgaaaacagtccttgcatcgcatattcaggggacatataacc 266  Q
    |||| |||||||| ||||||||||| | ||||||||| |||||||| || ||||| |||||    
T  20264251 taaaaacatctgacttctctgaaaataatccttgcattgcatattcgggagacatgtaacc 20264191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 106 - 263
Target Start/End: Complemental strand, 20274141 - 20273984
Alignment:
Q  106 ttgaggcttacaaatcctaaaagggtcagtgcatgctcattgtcataaaagcttgagtttcttctcctgctaataatctctagtatcaaaacaccaaagc 205  Q
    |||||||||||| ||||||||||| ||||   |||  |||  || ||||| |||||||||||| ||| | ||| ||||||||| ||||||||||||||||    
T  20274141 ttgaggcttacatatcctaaaaggctcagattatgtgcatcctcgtaaaaacttgagtttcttttcccggtaagaatctctaggatcaaaacaccaaagc 20274042  T
Q  206 taaagacatctgatttctctgaaaacagtccttgcatcgcatattcaggggacatata 263  Q
    |||| |||||||  ||||| ||||| | ||||||||| ||||||||||| ||||||||    
T  20274041 taaaaacatctgtcttctcggaaaataatccttgcattgcatattcaggagacatata 20273984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 329 - 409
Target Start/End: Original strand, 20062518 - 20062598
Alignment:
Q  329 gcacacttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccataccaaagtc 409  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||| || ||||||||||||||||| ||||||||    
T  20062518 gcacacttactaagttccgacaaccctagtagtattggcctgatcttctcttccaccaaagattctagccattccaaagtc 20062598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 333 - 409
Target Start/End: Complemental strand, 20303797 - 20303721
Alignment:
Q  333 acttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccataccaaagtc 409  Q
    |||||||||||||||||||||||  |||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  20303797 acttactaagttccgacaaccctggtagtattggcctgattttctctccctccaaagattctagccataccaaagtc 20303721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 147 - 266
Target Start/End: Complemental strand, 19939426 - 19939307
Alignment:
Q  147 gtcataaaagcttgagtttcttctcctgctaataatctctagtatcaaaacaccaaagctaaagacatctgatttctctgaaaacagtccttgcatcgca 246  Q
    ||||||||||||||| |||||||| |  ||||||||||| || |  ||||| ||||||||||||||||| ||||| || ||||||||||||||||| |||    
T  19939426 gtcataaaagcttgaatttcttcttccactaataatctcaagaagtaaaactccaaagctaaagacatcagatttatcagaaaacagtccttgcattgca 19939327  T
Q  247 tattcaggggacatataacc 266  Q
    ||||| || |||||||||||    
T  19939326 tattctggagacatataacc 19939307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 147 - 266
Target Start/End: Complemental strand, 19970565 - 19970446
Alignment:
Q  147 gtcataaaagcttgagtttcttctcctgctaataatctctagtatcaaaacaccaaagctaaagacatctgatttctctgaaaacagtccttgcatcgca 246  Q
    ||||||||||||||| |||||||| |  ||||||||||| || |  ||||| ||||||||||||||||| ||||| || ||||||||||||||||| |||    
T  19970565 gtcataaaagcttgaatttcttcttccactaataatctcaagaagtaaaactccaaagctaaagacatcagatttatcagaaaacagtccttgcattgca 19970466  T
Q  247 tattcaggggacatataacc 266  Q
    ||||| || |||||||||||    
T  19970465 tattctggagacatataacc 19970446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 308 - 416
Target Start/End: Original strand, 20168016 - 20168124
Alignment:
Q  308 ctataaaattagatgaggaaggcacacttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccataccaaag 407  Q
    |||||| ||| ||| |||||||| ||||||||||||||| |||| |||  |||||||||||| |||||| |  ||||||||||||||||||||||||||     
T  20168016 ctataatattggataaggaaggcgcacttactaagttccaacaatcctgctagtattggcctgatcttcacctcctccaaagattctagccataccaaat 20168115  T
Q  408 tctgatatt 416  Q
    |||||||||    
T  20168116 tctgatatt 20168124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 334 - 416
Target Start/End: Complemental strand, 20264108 - 20264026
Alignment:
Q  334 cttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccataccaaagtctgatatt 416  Q
    |||||||||||||||||| |||  |||||||||||| |||||| |  ||||||||||||||||||||||||||||||||||||    
T  20264108 cttactaagttccgacaatccttctagtattggcctgatcttcacctcctccaaagattctagccataccaaagtctgatatt 20264026  T

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Target: chr7; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 334 - 416
Target Start/End: Complemental strand, 20231649 - 20231567
Alignment:
Q  334 cttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccataccaaagtctgatatt 416  Q
    |||||||||||||||||| |||  | |||||||||| |||||| |  ||||||||||||||||||||||||||||||||||||    
T  20231649 cttactaagttccgacaatccttctggtattggcctgatcttcacctcctccaaagattctagccataccaaagtctgatatt 20231567  T

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Target: chr7; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 266
Target Start/End: Original strand, 20005104 - 20005258
Alignment:
Q  112 cttacaaatcctaaaagggtcagtgcatgctcattgtcataaaagcttgagtttcttctcctgctaataatctctagtatcaaaacaccaaagctaaaga 211  Q
    |||||||||||||| || ||||| | ||  ||||  ||||||||||||||||||| ||| |  |||| |||||||| || |||||| |||||||| ||||    
T  20005104 cttacaaatcctaagagagtcagagaattttcatgttcataaaagcttgagtttcgtcttccactaacaatctctattagcaaaactccaaagctgaaga 20005203  T
Q  212 catctgatttctctgaaaacagtccttgcatcgcatattcaggggacatataacc 266  Q
    | |||||||| || ||||| | ||||||||| ||||| || || | |||||||||    
T  20005204 cgtctgatttatccgaaaatactccttgcattgcatactctggagccatataacc 20005258  T

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Target: chr7; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 416
Target Start/End: Complemental strand, 20243714 - 20243632
Alignment:
Q  334 cttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccataccaaagtctgatatt 416  Q
    |||||||||||||||||| |||  |||||||||||| |||||| |  |||||||| |||||||||| ||||||||||||||||    
T  20243714 cttactaagttccgacaatccttctagtattggcctgatcttcacctcctccaaatattctagccagaccaaagtctgatatt 20243632  T

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Target: chr7; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 327 - 416
Target Start/End: Complemental strand, 20279624 - 20279535
Alignment:
Q  327 aggcacacttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccataccaaagtctgatatt 416  Q
    |||||||||||||| ||||||||||  ||   ||||||| ||| ||  |||| |||||||||||||||||||||||||||||||||||||    
T  20279624 aggcacacttactatgttccgacaattctggaagtattgacctgattgtctccccctccaaagattctagccataccaaagtctgatatt 20279535  T

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Target: chr7; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 333 - 416
Target Start/End: Original strand, 20005334 - 20005417
Alignment:
Q  333 acttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccataccaaagtctgatatt 416  Q
    |||||||| ||||||||||||||   ||||||||| | |||||| ||| ||||||||||||| |||||||||||||| ||||||    
T  20005334 acttactatgttccgacaaccctttgagtattggcatgatcttcactcactccaaagattctggccataccaaagtcagatatt 20005417  T

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Target: chr7; HSP #23
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 333 - 416
Target Start/End: Complemental strand, 20294765 - 20294682
Alignment:
Q  333 acttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccataccaaagtctgatatt 416  Q
    |||||||| ||||| |||| |||  |||||||||||| || |||||| |||||||||||||||||||| |||||||| ||||||    
T  20294765 acttactacgttccaacaatcctgctagtattggcctgatgttctctgcctccaaagattctagccattccaaagtccgatatt 20294682  T

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Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 409
Target Start/End: Complemental strand, 20273920 - 20273838
Alignment:
Q  327 aggcacacttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccataccaaagtc 409  Q
    |||||||||||||||||||| ||||  ||    |||||| ||| ||| |||| ||||||||||||||||||||||||||||||    
T  20273920 aggcacacttactaagttccaacaattctggaggtattgacctgatcgtctccccctccaaagattctagccataccaaagtc 20273838  T

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Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 416
Target Start/End: Complemental strand, 19939176 - 19939131
Alignment:
Q  371 atcttctctccctccaaagattctagccataccaaagtctgatatt 416  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||    
T  19939176 atcttcactccctccaaagattctggccataccaaagtctgatatt 19939131  T

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Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 416
Target Start/End: Complemental strand, 19970315 - 19970270
Alignment:
Q  371 atcttctctccctccaaagattctagccataccaaagtctgatatt 416  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||    
T  19970315 atcttcactccctccaaagattctggccataccaaagtctgatatt 19970270  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 193 - 275
Target Start/End: Original strand, 4159639 - 4159721
Alignment:
Q  193 aaaacaccaaagctaaagacatctgatttctctgaaaacagtccttgcatcgcatattcaggggacatataaccgctgtattt 275  Q
    ||||| ||||||||| | |||||||||||||| ||||| ||||||| ||| ||||||||||| | ||||||||| ||| ||||    
T  4159639 aaaactccaaagctataaacatctgatttctcagaaaaaagtccttccattgcatattcaggcggcatataaccactgcattt 4159721  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 266
Target Start/End: Original strand, 4130262 - 4130348
Alignment:
Q  180 aatctctagtatcaaaacaccaaagctaaagacatctgatttctctgaaaacagtccttgcatcgcatattcaggggacatataacc 266  Q
    ||||||||| |  ||||||||||||||| | ||||||||||||||||| || |||||   ||| ||||||||||| | |||||||||    
T  4130262 aatctctagcaataaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatataacc 4130348  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 2716872 - 2716940
Alignment:
Q  192 caaaacaccaaagctaaagacatctgatttctctgaaaacagtccttgcatcgcatattcaggggacat 260  Q
    |||||| ||||| ||||| |||||||||||||||||||||| ||||| ||| |||||||| || |||||    
T  2716872 caaaaccccaaaactaaatacatctgatttctctgaaaacaatccttccattgcatattccggagacat 2716940  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 2723495 - 2723563
Alignment:
Q  192 caaaacaccaaagctaaagacatctgatttctctgaaaacagtccttgcatcgcatattcaggggacat 260  Q
    |||||| ||||| ||||| ||||||||||||||||||||||| |||| ||| |||||||| || |||||    
T  2723495 caaaaccccaaaactaaatacatctgatttctctgaaaacagcccttccattgcatattccggagacat 2723563  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 2745325 - 2745393
Alignment:
Q  192 caaaacaccaaagctaaagacatctgatttctctgaaaacagtccttgcatcgcatattcaggggacat 260  Q
    |||||| ||||| ||||| ||||||||||||||||||||||| |||| ||| |||||||| || |||||    
T  2745325 caaaaccccaaaactaaatacatctgatttctctgaaaacagcccttccattgcatattccggagacat 2745393  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 2704305 - 2704345
Alignment:
Q  192 caaaacaccaaagctaaagacatctgatttctctgaaaaca 232  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  2704305 caaaaccccaaagctaaaaacatctgatttctctgaaaaca 2704345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 2711955 - 2712026
Alignment:
Q  192 caaaacaccaaagctaaagacatctgatttctctgaaaacagtccttgcatcgcatattcaggggacatata 263  Q
    |||||| ||||| ||||| | ||||||||||||||||||||  |||| ||| |||||||| || ||||||||    
T  2711955 caaaactccaaaactaaaaatatctgatttctctgaaaacaaccctttcattgcatattctggagacatata 2712026  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 28859769 - 28859821
Alignment:
Q  178 ataatctctagtatcaaaacaccaaagctaaagacatctgatttctctgaaaa 230  Q
    |||||||| || | || ||||||||| |||||||||||||||||| |||||||    
T  28859769 ataatctcaagaaccagaacaccaaaactaaagacatctgatttcactgaaaa 28859821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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