View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6547_high_16 (Length: 317)
Name: NF6547_high_16
Description: NF6547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6547_high_16 |
 | |
|
| [»] chr5 (6 HSPs) |
| |
|
| [»] chr4 (6 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 156; Significance: 7e-83; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 90 - 317
Target Start/End: Complemental strand, 29426038 - 29425811
Alignment:
| Q |
90 |
gatcctacgtaattaagcaagtacaaccaggatatacatataaataagagaaaacttataaatttatgagcataacttgtaagcaccaattcaagaacca |
189 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
29426038 |
gatcctacgtaattaagaaagcacaactaggatatacataaaaataagaaaaaacttataaatttatgagcataacttgtaagtaccaattaaagaacca |
29425939 |
T |
|
| Q |
190 |
aatacattgaagattacaatagtcaagccaatcacagtcgaagattcaagacatgtacctgagatatcactttttcatcttcagcaacaaaagagtcaag |
289 |
Q |
| |
|
|||| ||||||||||||||||| ||| ||||||||| ||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
29425938 |
aatagattgaagattacaatagaaaagacaatcacagctgaatattcaagacatgtacctgagatatgactttttcatcatcagcaacaaaagagtcaag |
29425839 |
T |
|
| Q |
290 |
agagtgttcttgttcttgttcttgttct |
317 |
Q |
| |
|
||||||||||| |||| ||||||||||| |
|
|
| T |
29425838 |
agagtgttcttcttctcgttcttgttct |
29425811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 152 - 317
Target Start/End: Complemental strand, 27919319 - 27919154
Alignment:
| Q |
152 |
tttatgagcataacttgtaagcaccaattcaagaaccaaatacattgaagattacaatagtcaagccaatcacagtcgaagattcaagacatgtacctga |
251 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27919319 |
tttatgagcataacttgtaagaaccaattcaagaaccaaatacattgaagattacaatagaaaagtcaatcacagtcgaagattcaagacatgtacctga |
27919220 |
T |
|
| Q |
252 |
gatatcactttttcatcttcagcaacaaaagagtcaagagagtgttcttgttcttgttcttgttct |
317 |
Q |
| |
|
||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27919219 |
gatatgactttttcatcttcagtaataaaagagtcaagagagtgttcttgttcttgttcttgttct |
27919154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 89 - 312
Target Start/End: Original strand, 29567735 - 29567958
Alignment:
| Q |
89 |
agatcctacgtaattaagcaagtacaaccaggatatacatataaataagagaaaacttataaatttatgagcataacttgtaagcaccaattcaagaacc |
188 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||| |||||||| |||||| ||||||||||| ||||||||||||||||||||| | ||||| ||||||| |
|
|
| T |
29567735 |
agatcctacataatcaagcaagtacaactaggagatacatatcaataaggaaaaacttataactttatgagcataacttgtaagtagcaattaaagaacc |
29567834 |
T |
|
| Q |
189 |
aaatacattgaagattacaatagtcaagccaatcacagtcgaagattcaagacatgtacctgagatatcactttttcatcttcagcaacaaaagagtcaa |
288 |
Q |
| |
|
|||| |||||||||||||||||| ||| || |||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
29567835 |
aaattcattgaagattacaatagaaaagacagtcacagtccaagattcaagacatatacctgagatatgactttttcatcttcagcaacaagagagtcag |
29567934 |
T |
|
| Q |
289 |
gagagtgttcttgttcttgttctt |
312 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
29567935 |
gagagtgctcttgttcttgttctt |
29567958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 93 - 317
Target Start/End: Complemental strand, 29168945 - 29168710
Alignment:
| Q |
93 |
cctacgtaattaagcaagtacaaccaggatatacatataaataagagaaaa--cttataaatttatgagcataacttgtaagcaccaa-------ttcaa |
183 |
Q |
| |
|
||||| |||||| |||||| ||| | |||||||||||||||| || |||| |||||||||||||||||||||||| |||| | ||| || || |
|
|
| T |
29168945 |
cctacataattatgcaagtgaaactaagatatacatataaatatgaaaaaaaacttataaatttatgagcataacttttaagtaacaactaacaattaaa |
29168846 |
T |
|
| Q |
184 |
gaaccaaa--tacattgaagattacaatagtcaagccaatcacagtcgaagattcaagacatgtacctgagatatcactttttcatcttcagcaacaaaa |
281 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||| | |
|
|
| T |
29168845 |
gaaccaaaagtacattgaagattacaatagaaaagacaatcacagtcgaagattcaagacatatacctgagatatgacattttcatcttcagcaacaaga |
29168746 |
T |
|
| Q |
282 |
gagtcaagagagtgttcttgttcttgttcttgttct |
317 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||| |
|
|
| T |
29168745 |
gagtcaagagagtgctcttcatcttgttcttgttct |
29168710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 218 - 312
Target Start/End: Complemental strand, 1758742 - 1758645
Alignment:
| Q |
218 |
caatcacagtcgaagattcaagacatgtacctgagatatcactttttcatcttcagcaacaaaagagtcaagagagtg---ttcttgttcttgttctt |
312 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1758742 |
caatcacagttgaagattcaagacatgcacctgagatatgactttttcatcttcagcaacaaaagagtcaagagagtgctcttcttgttcttgttctt |
1758645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 29169004 - 29168950
Alignment:
| Q |
20 |
aaactatgattataagcgaaactatgatcaaatgcaataccctcccataaccccc |
74 |
Q |
| |
|
|||||||||||| ||| | |||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
29169004 |
aaactatgattacaagtgcaactatgatcaaattcaataccttcccataaccccc |
29168950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 94 - 317
Target Start/End: Complemental strand, 27462784 - 27462561
Alignment:
| Q |
94 |
ctacgtaattaagcaagtacaaccaggatatacatataaataagagaaaacttataaatttatgagcataacttgtaagcaccaattcaagaaccaaata |
193 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| ||| |||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
27462784 |
ctacgtaattaagcaagtgcaactaggatatacataaaaacaagaaaaaacttataaatttatgagcataacttgtaagtaccaattaaagaaccaaata |
27462685 |
T |
|
| Q |
194 |
cattgaagattacaatagtcaagccaatcacagtcgaagattcaagacatgtacctgagatatcactttttcatcttcagcaacaaaagagtcaagagag |
293 |
Q |
| |
|
|||||||||||||||||| || |||||||||| ||| |||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27462684 |
cattgaagattacaatagaaaactcaatcacagttgaatattcaagatatgtacctgagatatgactttttcatcttcagaaacaaaagagtcaagagag |
27462585 |
T |
|
| Q |
294 |
tgttcttgttcttgttcttgttct |
317 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
27462584 |
ggttcttcttcttgttcttgttct |
27462561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 94 - 312
Target Start/End: Complemental strand, 18986805 - 18986584
Alignment:
| Q |
94 |
ctacgtaattaagcaagtacaaccaggatatacatataaataagagaaaacttataaatttatgagcataacttgtaagcaccaattcaagaaccaaata |
193 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| ||| |||| |||||||||||||||||||| |||||||||||| ||||||| |||||||||||| |
|
|
| T |
18986805 |
ctacgtaattaagcaagtgcaactaggatatacataaaaacaagaaaaaacttataaatttatgagtataacttgtaagtaccaattaaagaaccaaata |
18986706 |
T |
|
| Q |
194 |
cattgaagattacaatagtcaagccaatcacagtcgaagattcaagacatgtacctgagatatcactttttcatcttcagcaacaaaagagtcaagagag |
293 |
Q |
| |
|
|| ||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| || |
|
|
| T |
18986705 |
cactgaagattacaatagaaaagacaatcacagttgaagattcaagacatgtacctgagatatgactttttcatctttagcaacaaaagagtcaagacag |
18986606 |
T |
|
| Q |
294 |
tg---ttcttgttcttgttctt |
312 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
18986605 |
tgctcttcttgttcttgttctt |
18986584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 94 - 317
Target Start/End: Complemental strand, 27482858 - 27482632
Alignment:
| Q |
94 |
ctacgtaattaagcaagtacaaccaggatatacatataaataagagaaaacttataaatttatgagcataacttgtaagcaccaattcaagaaccaaata |
193 |
Q |
| |
|
|||||||||||| ||||| || | |||||||||| ||| |||| |||||||||||||||||||||||||||| |||| ||||||| |||||||||||| |
|
|
| T |
27482858 |
ctacgtaattaaacaagtgtgactacgatatacataaaaacaagaaaaaacttataaatttatgagcataacttataagtaccaattaaagaaccaaata |
27482759 |
T |
|
| Q |
194 |
cattgaagattacaatagtcaagccaatcacagtcgaagattcaagacatgtacctgagatatcactttttcatcttcagcaacaaaagagtcaagagag |
293 |
Q |
| |
|
|||||||||||||||||| || ||||||| || ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27482758 |
cattgaagattacaatagaaaacacaatcaccgttaaagattcaagatatgtacctgagatatgactttttcatcttcagcaacaaaagagtcaagagag |
27482659 |
T |
|
| Q |
294 |
tg---ttcttgttcttgttcttgttct |
317 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
27482658 |
tgctcttcttgttcttgttcttgttct |
27482632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 161 - 312
Target Start/End: Original strand, 27520779 - 27520932
Alignment:
| Q |
161 |
ataacttgtaagcaccaattcaagaaccaaatacattgaagattacaatagtcaagccaatcacagtcgaagattcaagacatgtacctgagatatcact |
260 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| |||||||||||||||| ||| ||| |||||||||| |||||||||||||||||||||| ||||| ||| |
|
|
| T |
27520779 |
ataacttgtaagtaccaattaaagaaccaactacattgaagattaca-tagaaaagacaatcacagttgaagattcaagacatgtacctgcgatatgact |
27520877 |
T |
|
| Q |
261 |
ttttcatcttcagcaacaaaagagtcaagagagtg---ttcttgttcttgttctt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27520878 |
ttttcatcttcagcaacaaaagagtcaagagagtgctcttcttgttcttgttctt |
27520932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 18986865 - 18986811
Alignment:
| Q |
20 |
aaactatgattataagcgaaactatgatcaaatgcaataccctcccataaccccc |
74 |
Q |
| |
|
|||||||||||| || | |||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
18986865 |
aaactatgattagaaatgcaactatgatcaaattcaataccttcccataaccccc |
18986811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 27520736 - 27520777
Alignment:
| Q |
97 |
cgtaattaagcaagtacaaccaggatatacatataaataaga |
138 |
Q |
| |
|
||||||||||||||| |||| |||||||||||| |||||||| |
|
|
| T |
27520736 |
cgtaattaagcaagtgcaactaggatatacataaaaataaga |
27520777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 91 - 312
Target Start/End: Complemental strand, 25519212 - 25518991
Alignment:
| Q |
91 |
atcctacgtaattaagcaagtacaaccaggatatacatataaataagagaaaacttataaatttatgagcataacttgtaagcaccaattcaagaaccaa |
190 |
Q |
| |
|
||||||| |||||||| |||| |||| ||||||| ||||||||||||| |||| | |||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
25519212 |
atcctacataattaagtaagtgcaactaggatattcatataaataagaaaaaattgataaatttatgagcataacttgtaagtaccaattaaagaaccaa |
25519113 |
T |
|
| Q |
191 |
atacattgaagattacaatagtcaagccaatcacagtcgaagattcaagacatgtacctgagatatcactttttcatcttcagcaacaaaagagtcaaga |
290 |
Q |
| |
|
||||||| ||||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
25519112 |
atacattcaagattacaatagaaaagacaatcacagtccaagattcaagacatatacctgagatatgactttttcatcttcagcaacaaaagagttaaga |
25519013 |
T |
|
| Q |
291 |
gagtgttcttgttcttgttctt |
312 |
Q |
| |
|
||||| |||| ||||||||||| |
|
|
| T |
25519012 |
gagtgctcttcttcttgttctt |
25518991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University