View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6547_high_17 (Length: 315)

Name: NF6547_high_17
Description: NF6547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6547_high_17
NF6547_high_17
[»] chr5 (2 HSPs)
chr5 (43-189)||(2059261-2059407)
chr5 (244-306)||(2059132-2059194)
[»] chr4 (2 HSPs)
chr4 (44-189)||(6486430-6486578)
chr4 (244-306)||(6486632-6486693)
[»] chr2 (4 HSPs)
chr2 (89-187)||(39923736-39923834)
chr2 (92-187)||(32476195-32476290)
chr2 (8-47)||(17445953-17445992)
chr2 (251-306)||(32476354-32476411)
[»] chr3 (1 HSPs)
chr3 (77-149)||(14743795-14743867)
[»] chr6 (1 HSPs)
chr6 (1-47)||(31565348-31565394)


Alignment Details
Target: chr5 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 2059407 - 2059261
Alignment:
Q  43 cttgatttctttgacagctacattctggttcccaccaattccttcaatccgttttacattccttggtttcttcttcctcattagaggttagcggtggtga 142  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2059407 cttgatttcattgacaactacattctggttcccaccaattccttcaatccgttttacattccttggtttcttcttcctcattagaggttagcggtggtga 2059308  T
Q  143 gtcggtgacttctttggcggagaaggagagtgacgaaggagtatgca 189  Q
    ||| ||||||||||| |||||||||||||||||||||||||||||||    
T  2059307 gtcagtgacttcttttgcggagaaggagagtgacgaaggagtatgca 2059261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 2059194 - 2059132
Alignment:
Q  244 ttcctagcttttggcaattttttccccaaattctttgaacgagattctatcatttgcctttga 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2059194 ttcctagcttttggcaattttttccccaaattctttgaacgagattctatcatttgcctttga 2059132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 6486430 - 6486578
Alignment:
Q  44 ttgatttctttgacagctacattctggttcccaccaattccttcaatccgttttacattccttggt---ttcttcttcctcattagaggttagcggtggt 140  Q
    |||||||  ||||||||||||||||||||||||||||||||||| || |||||||||||||| |||   ||||||||| |||||||||||| | ||||||    
T  6486430 ttgattttattgacagctacattctggttcccaccaattccttcgattcgttttacattcctaggtttcttcttcttcttcattagaggttggtggtggt 6486529  T
Q  141 gagtcggtgacttctttggcggagaaggagagtgacgaaggagtatgca 189  Q
    ||||||||||||||||| | ||||| |||||| ||| ||||||||||||    
T  6486530 gagtcggtgacttcttttgtggagagggagagagacaaaggagtatgca 6486578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 6486632 - 6486693
Alignment:
Q  244 ttcctagcttttggcaattttttccccaaattctttgaacgagattctatcatttgcctttga 306  Q
    ||||| |||||||||| ||||||||| ||||||||||||| ||||||||| ||||||||||||    
T  6486632 ttccttgcttttggcatttttttccc-aaattctttgaacaagattctataatttgcctttga 6486693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 187
Target Start/End: Original strand, 39923736 - 39923834
Alignment:
Q  89 atccgttttacattccttggtttcttcttcctcattagaggttagcggtggtgagtcggtgacttctttggcggagaaggagagtgacgaaggagtatg 187  Q
    ||||||||||||||||||||||||||||||||||||| ||||  | |||||||| |||||||||| ||| ||||||| |||||| ||||||||||||||    
T  39923736 atccgttttacattccttggtttcttcttcctcattaaaggtaggtggtggtgactcggtgacttattttgcggagagggagagagacgaaggagtatg 39923834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 32476195 - 32476290
Alignment:
Q  92 cgttttacattccttggtttcttcttcctcattagaggttagcggtggtgagtcggtgacttctttggcggagaaggagagtgacgaaggagtatg 187  Q
    ||||||||||||||||||||||||||||||||||||| || | |||||||||| |||||||||||| | ||||| |||| | ||| ||||||||||    
T  32476195 cgttttacattccttggtttcttcttcctcattagagattggtggtggtgagtaggtgacttcttttgtggagagggagggagacaaaggagtatg 32476290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 17445992 - 17445953
Alignment:
Q  8 atacttcttcctatgacaatgcaacaaatacttttcttga 47  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  17445992 atacttcttcctatgaaaatgcaacaaatacttgtcttga 17445953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 306
Target Start/End: Original strand, 32476354 - 32476411
Alignment:
Q  251 cttttggcaattttttccccaaattctttgaac--gagattctatcatttgcctttga 306  Q
    ||||||||| ||||||| | |||||||||||||  |||||||||||||||| ||||||    
T  32476354 cttttggcatttttttctcgaaattctttgaacgagagattctatcatttgactttga 32476411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 14743867 - 14743795
Alignment:
Q  77 ccaattccttcaatccgttttacattccttggtttcttcttcctcattagaggttagcggtggtgagtcggtg 149  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||| ||||  | |||| ||||||||||    
T  14743867 ccaattcctttgatccgttttacattccttggtttcttcttcctcattaaaggtaggtggtgatgagtcggtg 14743795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 31565394 - 31565348
Alignment:
Q  1 ctgttgtatacttcttcctatgacaatgcaacaaatacttttcttga 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  31565394 ctgttgtatacttcttcctatgaaaatgcaacaaatacttttcttga 31565348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University