View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6547_high_2 (Length: 708)

Name: NF6547_high_2
Description: NF6547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6547_high_2
NF6547_high_2
[»] chr2 (1 HSPs)
chr2 (19-702)||(6587438-6588122)


Alignment Details
Target: chr2 (Bit Score: 612; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 19 - 702
Target Start/End: Original strand, 6587438 - 6588122
Alignment:
Q  19 aaaccctagatcacttaaacaacttctatcgacaacacaaaaaacaaagtcatataatcaacatattcatatacgtacattacaaaaggtgtgccaaaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6587438 aaaccctagatcacttaaacaacttctatcgacaacacaaaaaacaaagtcatataatcaacatattcatatacgtacattacaaaaggtgcgccaaaaa 6587537  T
Q  119 tacatatacaaacattaagatggatcgcatatcgaaattggcatcacaaaaggcggtagtgatctttagcaagagttcatgtgggatgagccatgcaatt 218  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6587538 tacatatacaaacattaagatggatcgcatatcgaaattagcatcacaaaaggcggtagtgatctttagcaagagttcatgtgggatgagccatgcaatt 6587637  T
Q  219 aagagactattttatgagcaaggtgttggtccagcaatctatgagctagatgaagataagagggggaaggaaatggaatgggctctcataagattaggat 318  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6587638 aagagactattttatgagcaaggtgttggtccagcaatctatgaactagatgaagataagagggggagggaaatggaatgggctctcataagattaggat 6587737  T
Q  319 gcaaccctagtgttccagcagtgttcattggtggcaagtttgtgggttcagccaacataatcatgacccttcatctcaatggctcactcaagaaaatgct 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6587738 gcaaccctagtgttccagcagtgttcattggtggcaagtttgtgggttcagccaacataatcatgacccttcatctcaatggctcactcaagaaaatgct 6587837  T
Q  419 tagagaagctggtgcactttggctttaggaaaacttgaaatatggaagctcgcattctagtgcaaatgcaaacagccaaaaattgccttttttatataat 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6587838 tagagaagctggtgcactttggctttaggaaaacttgaaatatggaagctcgcattctagtgcaaatgcaaacagccaaaaatggccttttttatataat 6587937  T
Q  519 atcctaaccaagccctc--nnnnnnnnngtgagaccttgcggctttaagaatatgcattgtattagaataatctttgttacctccaatataattttgagt 616  Q
    |||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6587938 atcctaaccaagccctctttttttttttgtgagaccttgcggctttaagaatatgcattgtattagaataatctttgttacctccaatataattttgagt 6588037  T
Q  617 tgtacttctgaaactctgtgtacattgtttctcctttttcttttcttcacgaattgagtatttgcaactatataaattcatctctc 702  Q
    ||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6588038 tgtacttctgaaactttgtgtgcattgtttctccttttt-ttttcttcacgaattgagtatttgcaactatataaattcatctctc 6588122  T

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