View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6547_high_27 (Length: 251)
Name: NF6547_high_27
Description: NF6547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6547_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 38375766 - 38375960
Alignment:
| Q |
12 |
atgtaatctaaagtggatattttaaaatttgtttacttcatgttgattaaaaattccaatttgatcaaacatgtaattactctacatatcctcatttcac |
111 |
Q |
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| T |
38375766 |
atgtaatctaaagtggatattttaaaatttgtttacttcatgttgattaaaaattccaatttgatcaaacatgtgattactctacatatcctcatttcac |
38375865 |
T |
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| Q |
112 |
ttgagttttatgtgaattgcttattagaatgcatacaatcaactcgttgtgagatatacactcatttgttagtaatttgaatattgtgtcgttaa |
206 |
Q |
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| T |
38375866 |
ttgagttttatgtgaattgcttattataatgcatacaatcaactcgttgtgagatatgcattcatttgttagtaatttgaatattgtgtcgttaa |
38375960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 181
Target Start/End: Complemental strand, 45864532 - 45864385
Alignment:
| Q |
42 |
gtttacttca-tgttgattaaaaattccaatttgatcaaacatgtaattactctacatat----cctcatttcacttgagttttatgtgaattgctt--- |
133 |
Q |
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| T |
45864532 |
gtttacttcaatgttgattaaaaattctaatttggtcaaacatataattactatatatatatatcatccattcacttgagttttatgtaaattgctacta |
45864433 |
T |
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| Q |
134 |
attagaatgcatacaatcaactcgttgtgagatatacactcatttgtt |
181 |
Q |
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| T |
45864432 |
attagaatgcagacaatcaattggttgtaagatagacactcatttgtt |
45864385 |
T |
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