View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6547_high_3 (Length: 642)
Name: NF6547_high_3
Description: NF6547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6547_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 40 - 599
Target Start/End: Original strand, 27696129 - 27696689
Alignment:
| Q |
40 |
ttcccgatatgttaatggaaatcagaatgttagttgaaattgaaatgtagtaaaaatttgatattttgaggttgttgaagaaaaattgttttgaatttga |
139 |
Q |
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| T |
27696129 |
ttccctatatgttaatggaaatcagaatgttagttgaaattgaaatgtagtaaaaatttgatattttgaggttgttgaagaaaaattgttttgaatttga |
27696228 |
T |
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| Q |
140 |
gttagggaccgaaaatttgaagaaaattagaataggtgagtttagtagatcttaacatatctcgcttgaatggagagatagatgttgaataagattatgg |
239 |
Q |
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| T |
27696229 |
gttagggactgaaaatttgaagaaaattagaataggtgagtttagtagatcttaacatatctcgcttgaatggagagatagatgttgaataagattatgg |
27696328 |
T |
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| Q |
240 |
agatgatgaagtatggagatggaggcatgnnnnnnn-taagatagagacagaactaaaattcttataaagtatttgggttttaatttgacccggaagtat |
338 |
Q |
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| T |
27696329 |
agatgatgaagtatggagatggaggcatgaaaaaaaataagatagagatagaactcaaattcttataaagtatttgggttttaatttgacccggaagtat |
27696428 |
T |
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| Q |
339 |
gtaagggatgcactttagagggtaaagtttgaagttatcatggttgatgattgaaaagttattgtagttaatacatgtaaatgcattttattgtaatgtt |
438 |
Q |
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| T |
27696429 |
gtaagggatgcactttagagggtaaagtttgaagttatcatggttgatgattgaaaagttattgtagttaatacatgtaaatgcattttattgtaatgtt |
27696528 |
T |
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| Q |
439 |
aagggttgagttttaaactaagagattccatgtttcattatctaaatgctttgctttggaggaggaaaatctttataacaatgcatgttggatgtattct |
538 |
Q |
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| T |
27696529 |
aagggttgagttttaaactaagagattccatgtttcattatctaaatgctttgctttggaggaggaaaatctttataacaatgcatgttggatgtattct |
27696628 |
T |
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| Q |
539 |
ttgatcattgtctatagttatatctggtagattttgcttttacaattacatgattatgaag |
599 |
Q |
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| T |
27696629 |
ttgatcattgtctatagttatatctggtagattttgcttttacaattacatgattatgaag |
27696689 |
T |
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