View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6547_high_31 (Length: 245)
Name: NF6547_high_31
Description: NF6547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6547_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 41387259 - 41387481
Alignment:
| Q |
17 |
aataatagttatagcaatgtagcaaaatttgaacaaatcaatattgttttgtgatacactatctagtactaaatgttgttgttaaagagctgctatataa |
116 |
Q |
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| T |
41387259 |
aataatagttatagcaatgtagcgaaatttgaacaaatcaatattgttttgtgattcactatctagtactaaatgttgttgttaaagagctgctatataa |
41387358 |
T |
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| Q |
117 |
gtcaataacactattgcatagaagaatttgaatgaactgctattttctgcaatcttcgattctcactttctactactttgctgtgaaactattgcattgt |
216 |
Q |
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| T |
41387359 |
gtcaataaaactattgcatagaagaatttgaatgaactgctattttctgcaatcttcgattctcactttctactactttgctgtgaaactattgcattgt |
41387458 |
T |
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| Q |
217 |
gatttgcaacgtttaggctggat |
239 |
Q |
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| T |
41387459 |
gatttgcaacgtttaggctggat |
41387481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 11530023 - 11530072
Alignment:
| Q |
36 |
tagcaaaatttgaacaaatcaatattgttttgtgatacactatctagtac |
85 |
Q |
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| T |
11530023 |
tagcgaaatttgaacaaatcactattgttctgcgatacactatttagtac |
11530072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 41399636 - 41399578
Alignment:
| Q |
37 |
agcaaaatttgaacaaatcaatattgttttgtgatacactatctagtactaaatgttgt |
95 |
Q |
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| T |
41399636 |
agcaaaatttgaataaatcaatattgtgccgtgatacactatttagtacaaaatgttgt |
41399578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 2722277 - 2722233
Alignment:
| Q |
32 |
aatgtagcaaaatttgaacaaatcaatattgttttgtgatacact |
76 |
Q |
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| T |
2722277 |
aatgtagcaaaatttaaacaaatgaatattgttatgtgatacact |
2722233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 21869856 - 21869916
Alignment:
| Q |
35 |
gtagcaaaatttgaacaaatcaatattgttttgtgatacactatctagtactaaatgttgt |
95 |
Q |
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| T |
21869856 |
gtagcagaattcgaacaaatcattattgttccgtgatacactatttagtacaaaatgttgt |
21869916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 49363519 - 49363559
Alignment:
| Q |
130 |
ttgcatagaagaatttgaatgaactgctattttctgcaatc |
170 |
Q |
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|||||| | |||||||| ||||||||||||||||||||||| |
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| T |
49363519 |
ttgcattgcagaatttggatgaactgctattttctgcaatc |
49363559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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