View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6547_high_38 (Length: 203)
Name: NF6547_high_38
Description: NF6547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6547_high_38 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 27521322 - 27521501
Alignment:
| Q |
14 |
aggagcagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcagaagaa |
113 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27521322 |
aggatcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaa |
27521421 |
T |
|
| Q |
114 |
tgcttcttcgatgatagttggtgagcagaagatgatgatggtgaacagcgtttgacagagttgttatgagtgtgatgatg |
193 |
Q |
| |
|
|||||||| |||||| ||||||| ||||| |||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
27521422 |
tgcttcttggatgatggttggtgggcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
27521501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 27462108 - 27461934
Alignment:
| Q |
19 |
cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcagaagaatgctt |
118 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27462108 |
cagagacacagcggctaagagcatttccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
27462009 |
T |
|
| Q |
119 |
cttcgatgatagttggtgagcagaagatgatgatggtgaacagcgtttgacagagttgttatgagtgtgatgatg |
193 |
Q |
| |
|
||| |||||| |||||||| ||| |||||||||||||||| ||||||||||| |||||| |||||||||||||| |
|
|
| T |
27462008 |
cttggatgatggttggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatg |
27461934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 27482247 - 27482073
Alignment:
| Q |
19 |
cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcagaagaatgctt |
118 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27482247 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaattgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
27482148 |
T |
|
| Q |
119 |
cttcgatgatagttggtgagcagaagatgatgatggtgaacagcgtttgacagagttgttatgagtgtgatgatg |
193 |
Q |
| |
|
||| |||||| |||||||| ||| |||||||||||||||| ||||||||||| |||||| |||||||||||||| |
|
|
| T |
27482147 |
cttggatgatggttggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatg |
27482073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 18986208 - 18986034
Alignment:
| Q |
19 |
cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcagaagaatgctt |
118 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18986208 |
cagagacacagcggctaagagtattcccacggagactgaaagaaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
18986109 |
T |
|
| Q |
119 |
cttcgatgatagttggtgagcagaagatgatgatggtgaacagcgtttgacagagttgttatgagtgtgatgatg |
193 |
Q |
| |
|
||| ||||| ||||||||||||| |||||||||||||||||| ||||||||| |||||| |||| ||||||||| |
|
|
| T |
18986108 |
cttggatgacggttggtgagcagatgatgatgatggtgaacagagtttgacagtgttgttgtgagggtgatgatg |
18986034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 1e-70; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 29568361 - 29568535
Alignment:
| Q |
19 |
cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcagaagaatgctt |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29568361 |
cagagacacagcggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgctt |
29568460 |
T |
|
| Q |
119 |
cttcgatgatagttggtgagcagaagatgatgatggtgaacagcgtttgacagagttgttatgagtgtgatgatg |
193 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| |||||||| |||||| || |||||||||||||| |
|
|
| T |
29568461 |
cttggatgatagttggtgagcagaagatgatgatggtgaatggcgtttgaaagagtttttgtgagtgtgatgatg |
29568535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 35 - 194
Target Start/End: Original strand, 29569708 - 29569867
Alignment:
| Q |
35 |
aagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcagaagaatgcttcttcgatgatagttgg |
134 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
29569708 |
aagagcattgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcggaagaatgcttcttggatgatagttgg |
29569807 |
T |
|
| Q |
135 |
tgagcagaagatgatgatggtgaacagcgtttgacagagttgttatgagtgtgatgatgt |
194 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
29569808 |
tgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgt |
29569867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 35 - 193
Target Start/End: Complemental strand, 27918742 - 27918584
Alignment:
| Q |
35 |
aagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcagaagaatgcttcttcgatgatagttgg |
134 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
27918742 |
aagagcgttgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgccagaagaatgcttcttggatgatagttgg |
27918643 |
T |
|
| Q |
135 |
tgagcagaagatgatgatggtgaacagcgtttgacagagttgttatgagtgtgatgatg |
193 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
27918642 |
tgagcagaagatgatgatggtgaactgcgtttgacagagttgttgtgagtgtgatgatg |
27918584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 29168363 - 29168189
Alignment:
| Q |
19 |
cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcagaagaatgctt |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29168363 |
cagagacacagcagctaagagcattcccacggagactgaaaggaagtgtaatggtggagaagccattacgggtgagattgcttgcgttgaaagaatgctt |
29168264 |
T |
|
| Q |
119 |
cttcgatgatagttggtgagcagaagatgatgatggtgaacagcgtttgacagagttgttatgagtgtgatgatg |
193 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
29168263 |
attggatgatagttggtgagcagaagatgatgatggtgaacgacgtttgacagagttgttgtgagtgtgatgatg |
29168189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 1758256 - 1758082
Alignment:
| Q |
19 |
cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcagaagaatgctt |
118 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1758256 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
1758157 |
T |
|
| Q |
119 |
cttcgatgatagttggtgagcagaagatgatgatggtgaacagcgtttgacagagttgttatgagtgtgatgatg |
193 |
Q |
| |
|
||| |||| ||||||||||||| |||||||||||||||| ||||||||||||||| || |||| ||||||||| |
|
|
| T |
1758156 |
cttgagtgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagtttttgtgagagtgatgatg |
1758082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 29425404 - 29425232
Alignment:
| Q |
19 |
cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcagaagaatgctt |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
29425404 |
cagagacacagcggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgctt |
29425305 |
T |
|
| Q |
119 |
cttcgatgatagttggtgagcagaagatgatgat---ggtgaacagcgtttgacagagttgttatgagtgtga |
188 |
Q |
| |
|
||| |||||| ||||||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
29425304 |
cttggatgatggttggtgagcagatgatgatgatggtggtgaacggcgtttgacagagttgttgtgagtgtga |
29425232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 35 - 193
Target Start/End: Complemental strand, 25518576 - 25518418
Alignment:
| Q |
35 |
aagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcagaagaatgcttcttcgatgatagttgg |
134 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| |
|
|
| T |
25518576 |
aagagcattaccacgaagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatggttgg |
25518477 |
T |
|
| Q |
135 |
tgagcagaagatgatgatggtgaacagcgtttgacagagttgttatgagtgtgatgatg |
193 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
25518476 |
tgaggagaagatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
25518418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University