View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6547_high_4 (Length: 612)

Name: NF6547_high_4
Description: NF6547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6547_high_4
NF6547_high_4
[»] chr6 (21 HSPs)
chr6 (20-255)||(31565162-31565397)
chr6 (387-595)||(31564909-31565117)
chr6 (320-584)||(33414524-33414788)
chr6 (89-255)||(33414293-33414459)
chr6 (320-559)||(33269497-33269740)
chr6 (320-584)||(33395008-33395274)
chr6 (357-584)||(33258187-33258416)
chr6 (99-255)||(33383760-33383916)
chr6 (320-491)||(33383981-33384156)
chr6 (99-230)||(33351400-33351530)
chr6 (414-586)||(33278972-33279139)
chr6 (145-255)||(33292802-33292912)
chr6 (480-584)||(33293090-33293194)
chr6 (113-216)||(33258067-33258170)
chr6 (331-421)||(33292988-33293078)
chr6 (179-251)||(33269355-33269427)
chr6 (417-541)||(33280358-33280482)
chr6 (189-229)||(31567428-31567468)
chr6 (538-584)||(28873045-28873091)
chr6 (30-73)||(33414211-33414254)
chr6 (30-85)||(33351305-33351363)
[»] chr2 (4 HSPs)
chr2 (363-584)||(17447760-17447982)
chr2 (89-255)||(17445747-17445910)
chr2 (320-392)||(17445607-17445679)
chr2 (30-71)||(17445951-17445992)
[»] scaffold0428 (4 HSPs)
scaffold0428 (357-584)||(2308-2537)
scaffold0428 (414-586)||(15114-15281)
scaffold0428 (113-216)||(2188-2291)
scaffold0428 (417-541)||(13771-13895)


Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 255
Target Start/End: Complemental strand, 31565397 - 31565162
Alignment:
Q  20 actctgttgtatacttcttcctatgaaaatgcaacaaatacttttcttgaaaactttttaagctataattgtttctccaagagtgaaccgaacaaaacgc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565397 actctgttgtatacttcttcctatgaaaatgcaacaaatacttttcttgaaaactttttaagctataattgtttctccaagagtgaaccgaacaaaacgc 31565298  T
Q  120 cgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctagaagagcaa 219  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565297 cgcacattaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctagaagagcaa 31565198  T
Q  220 gctctcctaatctctttgagattcttccctcaacaa 255  Q
    ||||||||||||||||||||||||||||||||||||    
T  31565197 gctctcctaatctctttgagattcttccctcaacaa 31565162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 387 - 595
Target Start/End: Complemental strand, 31565117 - 31564909
Alignment:
Q  387 tgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgt 486  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt 31565018  T
Q  487 gaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 586  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565017 gaatgtatgtaccgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 31564918  T
Q  587 caagtgttg 595  Q
     ||||||||    
T  31564917 taagtgttg 31564909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 320 - 584
Target Start/End: Original strand, 33414524 - 33414788
Alignment:
Q  320 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaat 419  Q
    |||||||||| | ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  33414524 cttcgtcacaatagtttcgggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaactccttgaat 33414623  T
Q  420 ttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactc 519  Q
    ||||||||||| || | ||||||||||||||| ||||||||||||||||||| |||  ||| |||||||||||||||| ||||||||||||||||  ||     
T  33414624 ttctcacttctgccaacaaagtccgtttcacagttcacttcaattagaacaccaatacgtgcatcgtgaatgtatgtaccgattcttccttcagctgcta 33414723  T
Q  520 gtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 584  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  33414724 gtcttccggatttcttatcagcggatgagagaccctttttcctgagatatgcttgcgccttttca 33414788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 89 - 255
Target Start/End: Original strand, 33414293 - 33414459
Alignment:
Q  89 tgtttctccaagagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtca 188  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||||||    
T  33414293 tgtttctccgagagtgaaccgaacaaaacgccgcactttaatgttctctccaatagcagctatactttgcctcaccaagtctttcactacaacactgtca 33414392  T
Q  189 tccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 255  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  33414393 tccttaataaaaggctgctctagaagagcaagctctcctaacctctttgagattcttccctcgacaa 33414459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 320 - 559
Target Start/End: Original strand, 33269497 - 33269740
Alignment:
Q  320 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaat 419  Q
    |||||||||| | ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  33269497 cttcgtcacaatagtttcgggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaacttcttgaat 33269596  T
Q  420 ttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatg----tatgtagcgattcttccttcagca 515  Q
    ||||||||||| || | |||||| |||||||| |||||||||||||||||||  |||  || || |||||||    |||||| |||||||| |||||||     
T  33269597 ttctcacttctgccaacaaagtcggtttcacagttcacttcaattagaacaccgatgcatgcattgtgaatgtatatatgtaccgattctttcttcagct 33269696  T
Q  516 actcgtcttccggatttcttgtcagcggatgagagacccttttt 559  Q
     || ||||| | || ||||| |||||||||||||||||||||||    
T  33269697 gctagtcttgcagacttcttatcagcggatgagagacccttttt 33269740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 320 - 584
Target Start/End: Original strand, 33395008 - 33395274
Alignment:
Q  320 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaat 419  Q
    ||||||| || |||||| | ||||| |||||||||||||||||||||||||||||||||||||   |||||||| |||||||  ||| ||||||||||||    
T  33395008 cttcgtcgcaatggtttcaagaataccttcaatagatacaaactgaacctgtggacaagcagcctattgcattgaaagatcagcaaccaactccttgaat 33395107  T
Q  420 ttctcacttcta--ccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaac 517  Q
     | ||||||||   || | |||||| |||||||| ||||||||||| ||||||   ||| ||| ||||| ||||||| || ||||||||||||||||  |    
T  33395108 ctatcacttctgtgccaacaaagtcggtttcacagttcacttcaatcagaacatagatgcgtgcatcgtcaatgtatttaccgattcttccttcagctgc 33395207  T
Q  518 tcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 584  Q
    | | || ||||||||||||||||| ||||||||||||||| |||| ||||||| ||| |||||||||    
T  33395208 tagcctaccggatttcttgtcagctgatgagagaccctttgttctaaggtatgattgggccttttca 33395274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 357 - 584
Target Start/End: Original strand, 33258187 - 33258416
Alignment:
Q  357 acaaactgaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttc 455  Q
    ||||||||||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  |||    
T  33258187 acaaactgaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttc 33258286  T
Q  456 acttcaattagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagaccc 554  Q
    |||||||||||||||| ||||||||||||| || || |||||| |||||||||||||  |  || |||| ||||||||||| ||||||||||||||||||    
T  33258287 acttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccc 33258386  T
Q  555 ttttttctgaggtatgcttgcgccttttca 584  Q
    |||||  |||| |||||||||| |||||||    
T  33258387 tttttgatgagatatgcttgcggcttttca 33258416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 99 - 255
Target Start/End: Original strand, 33383760 - 33383916
Alignment:
Q  99 agagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatga 198  Q
    ||||||||||||||||||||||   |  |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  33383760 agagtgaaccgaacaaaacgcccagctttaatgttctcgccaatggcagctatactttgcctcaccaagtctttcactgaaacactgtcatccttaatga 33383859  T
Q  199 aaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 255  Q
    ||||||||| || |||||| || |||  ||| |||||||||||||||||||||||||    
T  33383860 aaggctgctttataagagcgagatctggtaacctctttgagattcttccctcaacaa 33383916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 320 - 491
Target Start/End: Original strand, 33383981 - 33384156
Alignment:
Q  320 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagca----gcaacttgcattgcaagatcatgaacaaactcctt 415  Q
    |||||||||| |||||| | |||||||||||| ||||||||||||||||| ||||||||||    || ||||||||||||||||||| ||| ||||||||    
T  33383981 cttcgtcacaatggtttcaagaatatcttcaacagatacaaactgaacctctggacaagcaagcagccacttgcattgcaagatcatcaaccaactcctt 33384080  T
Q  416 gaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatg 491  Q
     | |||||||||||| |||| |||||| |||| ||| |||||||||||||||||||  |||||||||| |||||||    
T  33384081 aattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacaccgatgtgtgaatagtgaatg 33384156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 99 - 230
Target Start/End: Original strand, 33351400 - 33351530
Alignment:
Q  99 agagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatga 198  Q
    |||||||||||||||||||||||| |  |||||||||| |||||  |||||||||||||||||||||||||||| |||| ||||||||| |||||||| |    
T  33351400 agagtgaaccgaacaaaacgccgcgctttaatgttctctccaataccagctatactttgcctcaccaagtctttcactacaacactgtcgtccttaat-a 33351498  T
Q  199 aaggctgctctagaagagcaagctctcctaat 230  Q
    |||| ||| |||||||||||||||||||||||    
T  33351499 aaggatgccctagaagagcaagctctcctaat 33351530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 414 - 586
Target Start/End: Original strand, 33278972 - 33279139
Alignment:
Q  414 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcag 513  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||    
T  33278972 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctttag 33279071  T
Q  514 caactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 586  Q
     | ||    | ||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||    
T  33279072 tagct----tgccggatttcttgtcagctgataagagaccc-tttttctaaggtatgcttgcgccttttcatg 33279139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 33292802 - 33292912
Alignment:
Q  145 cagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattct 244  Q
    ||||||||||||||||| |||||||||| |   ||||||||||||||||||||||||||||||||| ||||| |||| ||||||| ||||||||||||||    
T  33292802 cagctatactttgcctctccaagtctttcaaagaaacactgtcatccttaatgaaaggctgctctataagagaaagccctcctaacctctttgagattct 33292901  T
Q  245 tccctcaacaa 255  Q
    |||||||||||    
T  33292902 tccctcaacaa 33292912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 480 - 584
Target Start/End: Original strand, 33293090 - 33293194
Alignment:
Q  480 gaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgcct 579  Q
    |||||||||||||||||| | ||||||||||||||  || |||||| ||||||||| |||||| |||||||||||||||||||||||||||||| | |||    
T  33293090 gaatcgtgaatgtatgtaccaattcttccttcagctgctagtcttctggatttcttatcagcgaatgagagacccttttttctgaggtatgctttcacct 33293189  T
Q  580 tttca 584  Q
    |||||    
T  33293190 tttca 33293194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 33258067 - 33258170
Alignment:
Q  113 aaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctaga 212  Q
    |||||||| |||  ||||| |||||| |||| ||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||    
T  33258067 aaaacgccacactttaatggtctcgcaaatgccagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctaga 33258166  T
Q  213 agag 216  Q
    ||||    
T  33258167 agag 33258170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 331 - 421
Target Start/End: Original strand, 33292988 - 33293078
Alignment:
Q  331 tggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaattt 421  Q
    |||||||  |||||||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||| ||| ||||||||||||||    
T  33292988 tggttttgagaatatcttcaatagatacaaactgaacctgaagaatagcagcaacttgcattgcaagatcattaaccaactccttgaattt 33293078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 33269355 - 33269427
Alignment:
Q  179 aacactgtcatccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctca 251  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||    
T  33269355 aacactgtcatccttaataaaaggctactctagaagagcaagctctcctaacctctttgagatttttccctca 33269427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 541
Target Start/End: Original strand, 33280358 - 33280482
Alignment:
Q  417 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 516  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  33280358 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 33280457  T
Q  517 ctcgtcttccggatttcttgtcagc 541  Q
     |  |||||||||||||||||||||    
T  33280458 ttaatcttccggatttcttgtcagc 33280482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 31567468 - 31567428
Alignment:
Q  189 tccttaatgaaaggctgctctagaagagcaagctctcctaa 229  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  31567468 tccttaatgaaaggctgctctagaagagaaagctctcctaa 31567428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 538 - 584
Target Start/End: Complemental strand, 28873091 - 28873045
Alignment:
Q  538 cagcggatgagagacccttttttctgaggtatgcttgcgccttttca 584  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||||    
T  28873091 cagcagatgagagacccttttatctgaggtatgcttacgccttttca 28873045  T

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Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 33414211 - 33414254
Alignment:
Q  30 atacttcttcctatgaaaatgcaacaaatacttttcttgaaaac 73  Q
    ||||||||||||||||||||||||| | ||||| ||||||||||    
T  33414211 atacttcttcctatgaaaatgcaacgattacttctcttgaaaac 33414254  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 33351305 - 33351363
Alignment:
Q  30 atacttcttcctatgaaaatgca---acaaatacttttcttgaaaactttttaagctat 85  Q
    |||||||||||||||||||||||   |||||||||| |||||||| | || ||||||||    
T  33351305 atacttcttcctatgaaaatgcaaagacaaatacttgtcttgaaagcgttgtaagctat 33351363  T

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Target: chr2 (Bit Score: 119; Significance: 2e-60; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 363 - 584
Target Start/End: Complemental strand, 17447982 - 17447760
Alignment:
Q  363 tgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaa 462  Q
    |||||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||| |||| ||||| || | |||||| |||||| | |||| |||||    
T  17447982 tgaacctgtggaaaagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaa 17447883  T
Q  463 ttagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagaga-cccttttttc 561  Q
    ||||| |||  ||| ||| |||||||||||||||| ||||||||||||||||  |  |||||||||||||||| ||||||||||||||| ||||||||||    
T  17447882 ttagaccaccgatgcgtgcatcgtgaatgtatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccccttttttc 17447783  T
Q  562 tgaggtatgcttgcgccttttca 584  Q
    |||||||||||||||||||||||    
T  17447782 tgaggtatgcttgcgccttttca 17447760  T

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Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 89 - 255
Target Start/End: Complemental strand, 17445910 - 17445747
Alignment:
Q  89 tgtttctccaagagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtca 188  Q
    |||||||||  ||||||||| |||||||||||||||  |||    ||| ||||| ||||||||||||||||||||||| | ||| ||| |||| ||||||    
T  17445910 tgtttctccgggagtgaacctaacaaaacgccgcactttaaa---ctctccaatagcagctatactttgcctcaccaaatatttcactgaaacgctgtca 17445814  T
Q  189 tccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 255  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||    
T  17445813 tccttaatgaaaggctgctctagaagagcaagctctcctaacctctttgagatccttccctcgacaa 17445747  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 320 - 392
Target Start/End: Complemental strand, 17445679 - 17445607
Alignment:
Q  320 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcatt 392  Q
    |||| ||||| ||||||  ||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  17445679 cttcttcacaatggtttcgggaatatcttcaatagatacaaactgaacatgtggacaagcatcaacttgcatt 17445607  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 17445992 - 17445951
Alignment:
Q  30 atacttcttcctatgaaaatgcaacaaatacttttcttgaaa 71  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  17445992 atacttcttcctatgaaaatgcaacaaatacttgtcttgaaa 17445951  T

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Target: scaffold0428 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 357 - 584
Target Start/End: Original strand, 2308 - 2537
Alignment:
Q  357 acaaactgaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttc 455  Q
    ||||||||||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  |||    
T  2308 acaaactgaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttc 2407  T
Q  456 acttcaattagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagaccc 554  Q
    |||||||||||||||| ||||||||||||| || || |||||| |||||||||||||  |  || |||| ||||||||||| ||||||||||||||||||    
T  2408 acttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccc 2507  T
Q  555 ttttttctgaggtatgcttgcgccttttca 584  Q
    |||||  |||| |||||||||| |||||||    
T  2508 tttttgatgagatatgcttgcggcttttca 2537  T

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Target: scaffold0428; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 414 - 586
Target Start/End: Complemental strand, 15281 - 15114
Alignment:
Q  414 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcag 513  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||    
T  15281 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctttag 15182  T
Q  514 caactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 586  Q
     | ||    | ||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||    
T  15181 tagct----tgccggatttcttgtcagctgataagagaccc-tttttctaaggtatgcttgcgccttttcatg 15114  T

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Target: scaffold0428; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 2188 - 2291
Alignment:
Q  113 aaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctaga 212  Q
    |||||||| |||  ||||| |||||| |||| ||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||    
T  2188 aaaacgccacactttaatggtctcgcaaatgccagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctaga 2287  T
Q  213 agag 216  Q
    ||||    
T  2288 agag 2291  T

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Target: scaffold0428; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 541
Target Start/End: Complemental strand, 13895 - 13771
Alignment:
Q  417 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 516  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  13895 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 13796  T
Q  517 ctcgtcttccggatttcttgtcagc 541  Q
     |  |||||||||||||||||||||    
T  13795 ttaatcttccggatttcttgtcagc 13771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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