View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6547_high_7 (Length: 471)
Name: NF6547_high_7
Description: NF6547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6547_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 16 - 436
Target Start/End: Original strand, 34093144 - 34093564
Alignment:
| Q |
16 |
aatactccaaaatcaaaactttgctatcttatatcaaatctcagtagcactgagagtagccgaaaaggtaaccatgcatagttttaggtgcagagtgcaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34093144 |
aatactccaaaatcaaaactttgctatcttatatcaaatctcagtagcactgcgagtagccgaaaaggtaaccatgcatagttttaggtgcagagtgcaa |
34093243 |
T |
|
| Q |
116 |
ttctgatatgtgtatgtatgtcaatgtgacatgacttctactttggcatattccaataccagaaaaattgattctactaaaattcatgagccacgagaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34093244 |
ttctgatatgtgtatgtatgtcaatgtgacatgacttctactttggcatattccaataccagaaaaattgattctactaaaattcatgagccacgagaaa |
34093343 |
T |
|
| Q |
216 |
atggaaaaaagacaataaccctatattaagaaagtgctattaattaatataataatacttcattatggcaaacatgtc---actaccagtgctaacagat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34093344 |
atggaaaaaagacaataaccctatattaagaaagtgctattaattaatataataatacttcattatggcaaacatgtcactactaccagtgctaacagat |
34093443 |
T |
|
| Q |
313 |
aaccacaatggaagcagcagcattaccatcatgtcgacatgtaaaatcatagagtgaaaattttatcaaagatccttcaaatttttactaccatttattg |
412 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34093444 |
aaccacaatgga---agcagcattaccatcatgtcgacaagtaaaatcatagagtgaaaattttatcaaagatccttcaaatttttactaccatttattg |
34093540 |
T |
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| Q |
413 |
cattaacatcatcacatcacatca |
436 |
Q |
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|||||||||||||||||||||||| |
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| T |
34093541 |
cattaacatcatcacatcacatca |
34093564 |
T |
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