View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6547_low_11 (Length: 446)
Name: NF6547_low_11
Description: NF6547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6547_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 39291849 - 39292241
Alignment:
| Q |
18 |
taaataacatatccgcctcacagaataatatgcatcttaatgattattgaatgaactatgtatgtaactcacatatataataatacaattttcatattat |
117 |
Q |
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| T |
39291849 |
taaataacatatctgcctcacagaataatatgcatcttaatgattattgaatgaactatgtatgtaactcacatatataataatacaattttcatattat |
39291948 |
T |
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| Q |
118 |
ttattgttttctacatcgaaaatacatttcttgtacaacaaactcagacttgtgatcttaaacttattaactaagagcccctaaaggatctttaacttga |
217 |
Q |
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| T |
39291949 |
ttattattttctacatcgaaaatacatttcttgtacaacaaacttcgacttgtgatcttaaacttatcaactaagagcccctaaaggatctttaacttga |
39292048 |
T |
|
| Q |
218 |
atcctagattgatatttcgagttcattcgttgaaaggaaagtttttcaaaccaccacatctcatcttaattattcttgctatatattcctccaaccttac |
317 |
Q |
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| T |
39292049 |
atcctagattgatatttcgagttcattccttgaaaggaaagtttttcaaaccaccacatctcatcttaattattcttgctatatattcctccaaccttac |
39292148 |
T |
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| Q |
318 |
tagaagcaaactaactatatttgttaagagtttcg--------gaggtatgacataacaatatatttataagagcatatcaaagctttggtga |
402 |
Q |
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| T |
39292149 |
tagaagcaaactaactatatttgttaagagtttcgcattggatgaggtatgacataacaatatatttataagagcatatcaaagcttcggtga |
39292241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 426
Target Start/End: Complemental strand, 39292266 - 39292237
Alignment:
| Q |
397 |
tggtgaccacctgatagcatgtggctcacc |
426 |
Q |
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| T |
39292266 |
tggtgaccacctgatagcatgtggctcacc |
39292237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 41106525 - 41106470
Alignment:
| Q |
208 |
tttaacttgaatcctagattgatatttcgagttcattcgttgaaaggaaagttttt |
263 |
Q |
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| T |
41106525 |
tttaacttaaatcctatattgatgtttcgagttcatttgttgaaaggaaagatttt |
41106470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 266
Target Start/End: Original strand, 560867 - 560957
Alignment:
| Q |
175 |
ttaaacttattaactaaga-gcccctaaaggatctttaacttgaatcctagattgatatttcgagttcattcgttgaaaggaaagtttttcaa |
266 |
Q |
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| T |
560867 |
ttaaacttatcaactaagaagcctcttaaggatgt--aactcgaatcatagattgatatgtcgagttcatttgttgaagggaaacattttcaa |
560957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 2221393 - 2221349
Alignment:
| Q |
210 |
taacttgaatcctagattgatatttcgagttcattcgttgaaagg |
254 |
Q |
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||||||||||| ||||||||| ||||||||||||| |||| |||| |
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| T |
2221393 |
taacttgaatcttagattgatttttcgagttcatttgttggaagg |
2221349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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