View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6547_low_16 (Length: 396)
Name: NF6547_low_16
Description: NF6547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6547_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 354
Target Start/End: Original strand, 11248067 - 11248403
Alignment:
| Q |
20 |
gggttcttggttgttaatctcttcttgaagcctagttggttggccatggctcattgtgtttcnnnnnnnnnnnnnn---ggttgaagaagggtttggaaa |
116 |
Q |
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| T |
11248067 |
gggttcttggttgttaatctcttcttgaagcctagttggttggccatggctcattgtgtttcttttttgttttttttttggttgaagaagggtttggaaa |
11248166 |
T |
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| Q |
117 |
tttgagtgagtggtaaatttggtgacagnnnnnnngggttaagtaaattattgtgggttgaaaagctgcatggagaagtggcacgtgtaggttgtgaagt |
216 |
Q |
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| T |
11248167 |
tt-gagtgagtggtaaatttggtgacagtttttttgggttaagtaaattattgtgggttgaaaagctgcatggagaagtggcacgtgtaggttgtgaagt |
11248265 |
T |
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| Q |
217 |
aatgaagggtgaacgtgtcgtatgattaggtatccacgatatgagtgatgtgacattgttttgtccaatggtagattccatacgtgtttttggcgtgtag |
316 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11248266 |
aatgaagggtgaacgtgtcgtatgattacgtatccacgatatgagtgatgtgacattgttttgtccaatggtaggttccatacgtgtttttggcgtgtag |
11248365 |
T |
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| Q |
317 |
cactttggccttcttttttctttgaatgcattacgatg |
354 |
Q |
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| T |
11248366 |
cactttggccttcttttttctttgaatgcattacgatg |
11248403 |
T |
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