View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6547_low_18 (Length: 362)

Name: NF6547_low_18
Description: NF6547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6547_low_18
NF6547_low_18
[»] chr7 (1 HSPs)
chr7 (1-353)||(3007965-3008316)
[»] chr4 (2 HSPs)
chr4 (1-342)||(6722957-6723302)
chr4 (121-224)||(50858809-50858917)
[»] chr2 (1 HSPs)
chr2 (1-342)||(41897864-41898205)
[»] chr1 (3 HSPs)
chr1 (3-342)||(2414086-2414429)
chr1 (78-342)||(52985460-52985727)
chr1 (188-322)||(27204438-27204571)
[»] chr3 (4 HSPs)
chr3 (1-342)||(50060213-50060558)
chr3 (1-174)||(1533135-1533308)
chr3 (188-342)||(1528341-1528494)
chr3 (200-302)||(46145022-46145123)
[»] scaffold0118 (1 HSPs)
scaffold0118 (1-172)||(17879-18046)
[»] chr8 (1 HSPs)
chr8 (283-342)||(16985811-16985870)


Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 3008316 - 3007965
Alignment:
Q  1 tcaattggtatacttgcagacttttatgatgtctttccagtctcttgtagaagatcagtaatgtatttctgtcgagatatgaaaattcctttcttggagt 100  Q
    ||||||||| |||||| ||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3008316 tcaattggtgtacttgtagacttgcatgatgtctttccagtctcttgtagaatatcagtaatgtatttctgtcgagatatgaaaattcctttcttggagt 3008217  T
Q  101 gagccacttcaattcccaataaatactttaattttcccaaggtcttgatctcaaactctttggctaagtgttggactataaatcctttcttcatcatcgc 200  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3008216 gagccacttcaattcccaataaatactttaattttccgaagttcttgaactcaaactctttggctaagtgttggcctataaatcctttcttcatcatcgc 3008117  T
Q  201 ttgtcactataatgtcgtccacatataccagtaacacggttacttccccctgttttggagtgtttgacaaataaagtattgtctccttggctttgtttga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  3008116 ttgtcactataatgtcgtccacatataccagtaacacggttacttccccc-gtcttggagtgtttgacaaataaagtattgtctccttggctttgtttga 3008018  T
Q  301 agctcaaacctaccataactttagtgaatctcccaaaccatgaacatgatgat 353  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3008017 agcccaaacctaccataactttagtgaatctcccaaaccatgaacatggtgat 3007965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 6723302 - 6722957
Alignment:
Q  1 tcaattggtatacttgcagacttttatgatgtctttccagtctcttgtagaagatcagtaatgtatttctgtcgagatatgaaaattcctttcttggagt 100  Q
    ||||||||| ||||||||| |||  ||| |||||| |||||||| || | |||||||||||||||||||||| ||||||||||||||| ||| ||  |||    
T  6723302 tcaattggtgtacttgcaggcttgcatgttgtcttgccagtctcatgcacaagatcagtaatgtatttctgttgagatatgaaaattctttttttatagt 6723203  T
Q  101 gagccacttcaattcccaataaatactttaattttcccaaggtcttgatctcaaactctttggctaagtgttggactataaatcctt-----tcttcatc 195  Q
    ||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||| |||  |||| ||     ||||||||    
T  6723202 gagtcacttcaattcccaaaaactactttaattttcccaaggtcttgatctcaaactctttggttaagtgttggcctaacaatctttcctcctcttcatc 6723103  T
Q  196 atcgcttgtcactataatgtcgtccacatataccagtaacacggttacttccccctgttttggagtgtttgacaaataaagtattgtctccttggctttg 295  Q
    ||||| |||||||||||||||||||||||||||||| ||||| |||||| | |||||| | ||||||||||| ||||||||||| |||||||||||||||    
T  6723102 atcgcatgtcactataatgtcgtccacatataccagcaacactgttact-ctccctgtctcggagtgtttgaaaaataaagtatggtctccttggctttg 6723004  T
Q  296 tttgaagctcaaacctaccataactttagtgaatctcccaaaccatg 342  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  6723003 tttgaagctcaaacctacaataactttagtgaatctcccaaaccatg 6722957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 224
Target Start/End: Original strand, 50858809 - 50858917
Alignment:
Q  121 aaatactttaattttcccaaggtcttgatctcaaactctttggctaagtgttggactataaatcctt-----tcttcatcatcgcttgtcactataatgt 215  Q
    |||||||| ||||||||||||||||| |||||||  || ||||||||||||||| |||  | |  ||     ||||||||||| | ||||||||||||||    
T  50858809 aaatacttcaattttcccaaggtcttaatctcaacttcattggctaagtgttggcctaacagttgttgctcctcttcatcatcacctgtcactataatgt 50858908  T
Q  216 cgtccacat 224  Q
    |||||||||    
T  50858909 cgtccacat 50858917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 41898205 - 41897864
Alignment:
Q  1 tcaattggtatacttgcagacttttatgatgtctttccagtctcttgtagaagatcagtaatgtatttctgtcgagatatgaaaattcctttcttggagt 100  Q
    ||||||||| ||||||||| |||  ||| |||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||     || |    
T  41898205 tcaattggtgtacttgcaggcttgcatgttgtcttgccagtctcttgcagaagatctgtaatgtatttctgttgagatatgaaaattcctta----gaat 41898110  T
Q  101 gagccacttcaattcccaataaatactttaattttcccaaggtcttgatctcaaactctttggctaagtgttggacta-------taaatcctttcttca 193  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||       ||  |||  ||||||    
T  41898109 gagccacttcaattcccaaaaaatactttaattttcccaaggtcttgatctcgaactctttggctaagtgttggcctaacagttttagctcc--tcttca 41898012  T
Q  194 tcatcgcttgtcactataatgtcgtccacatataccagtaacacggttacttccccctgttttggagtgtttgacaaataaagtattgtctccttggctt 293  Q
    ||||| | ||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||| || |||||| |||    
T  41898011 tcatcacctgtcactataatgtcatccacatataccagcaacactgttac-tccccctgtttcggagtgtttgacaaataaagtatggtgtccttgactt 41897913  T
Q  294 tgtttgaagctcaaacctaccataactttagtgaatctcccaaaccatg 342  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  41897912 tgtttgaagcccaaacctaccataactttagtgaatctaccaaaccatg 41897864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 173; Significance: 6e-93; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 3 - 342
Target Start/End: Complemental strand, 2414429 - 2414086
Alignment:
Q  3 aattggtatacttgcagacttttatgatgtctttccagtctcttgtagaagatcagtaatgtatttctgtcgagatatgaaaattcctttcttggagtga 102  Q
    ||||||| ||||||||| |||  ||| |||||| |||||||| |  |||||||| ||||||||||||||| |||||||||||||||||||||| || |||    
T  2414429 aattggtctacttgcaggcttgcatgctgtcttgccagtctcctacagaagatctgtaatgtatttctgttgagatatgaaaattcctttcttagaatga 2414330  T
Q  103 gccacttcaattcccaataaatactttaattttcccaaggtcttgatctcaaactctttggctaagtgttggactataaatcctt-----tcttcatcat 197  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||  | |  ||     ||||||||||    
T  2414329 gccacttcaattcccaaaaaatacttcaattttcccaaggtcttgatctcgaactctttggctaagtgttggcctaacagtttttgctcatcttcatcat 2414230  T
Q  198 cgcttgtcactataatgtcgtccacatataccagtaacacggttacttccccctgttttggagtgtttgacaaataaagtattgtctccttggctttgtt 297  Q
    | | |||| |||||||||| |||||||||||||| ||||| ||||| |||| |||||| ||||||||||||||||||||||| |||||||||  ||| ||    
T  2414229 cacctgtcgctataatgtcatccacatataccagcaacactgttac-tccctctgtttcggagtgtttgacaaataaagtatggtctccttgattttctt 2414131  T
Q  298 tgaagctcaaacctaccataactttagtgaatctcccaaaccatg 342  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||    
T  2414130 tgaagcccaaacctaccataactttagtgaatctaccaaaccatg 2414086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 78 - 342
Target Start/End: Complemental strand, 52985727 - 52985460
Alignment:
Q  78 tatgaaaattcctttcttggagtgagccacttcaattcccaataaatactttaattttcccaaggtcttgatctcaaactctttggctaagtgttggact 177  Q
    |||||||||| ||||||| ||||||| ||||||||||| ||  ||||| || ||||| |||||||||||||||||||| |  ||||| |||||||||  |    
T  52985727 tatgaaaatttctttcttagagtgagtcacttcaattctcataaaatatttcaattt-cccaaggtcttgatctcaaattaattggccaagtgttgggat 52985629  T
Q  178 ataaatcctt-----tcttcatcatcgcttgtcactataatgtcgtccacatataccagtaacacggttacttccccctgttttggagtgtttgacaaat 272  Q
    |  | |  ||     ||||||||||| |  || ||| |||||||||||||||| |||| |||||| |||||| ||||||   || |||||||||||||||    
T  52985628 aatagttgttgctcctcttcatcatcaccggttactgtaatgtcgtccacatacaccaataacactgttact-ccccctaacttagagtgtttgacaaat 52985530  T
Q  273 aaagtattgtctccttggctttgtttgaagctcaaacctaccataactttagtgaatctcccaaaccatg 342  Q
    ||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||    
T  52985529 aaagtatggtttccttggctttgtttgaagcccaaacataccataactttagtgaatctcctaaaccatg 52985460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 188 - 322
Target Start/End: Original strand, 27204438 - 27204571
Alignment:
Q  188 tcttcatcatcgcttgtcactataatgtcgtccacatataccagtaacacggttacttccccctgttttggagtgtttgacaaataaagtattgtctcct 287  Q
    ||||||||||| | ||||||||||||||| |||||||| |||| ||||||   |||| |||| || ||  |||||||||| |||||||||||  ||||||    
T  27204438 tcttcatcatcacctgtcactataatgtcatccacatacaccaataacacttctact-ccccatgattcagagtgtttgataaataaagtatgatctcct 27204536  T
Q  288 tggctttgtttgaagctcaaacctaccataacttt 322  Q
    || ||||||||||| | ||||||||||||||||||    
T  27204537 tgactttgtttgaaccccaaacctaccataacttt 27204571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 50060558 - 50060213
Alignment:
Q  1 tcaattggtatacttgcagacttttatgatgtctttccagtctcttgtagaagatcagtaatgtatttctgtcgagatatgaaaattcctttcttggagt 100  Q
    ||||||||| ||||||||| |||  |||  | ||| |||||||| || |||||||||||||| ||||||||| | |||||||||||||||||||| ||||    
T  50060558 tcaattggtgtacttgcaggcttgcatgcggccttgccagtctcctgcagaagatcagtaatatatttctgttgggatatgaaaattcctttcttagagt 50060459  T
Q  101 gagccacttcaattcccaataaatactttaattttcccaaggtcttgatctcaaactctttggctaagtgttggactataaatcctt-----tcttcatc 195  Q
    |||||||||||||||| |  |||||||| |||||||||||||||||||||||||| || ||||| ||||||||| |||  | |  ||     ||||||||    
T  50060458 gagccacttcaattcctagaaaatacttcaattttcccaaggtcttgatctcaaattcattggccaagtgttgggctaatagttgttgctcctcttcatc 50060359  T
Q  196 atcgcttgtcactataatgtcgtccacatataccagtaacacggttacttccccctgttttggagtgtttgacaaataaagtattgtctccttggctttg 295  Q
    ||| |  || |||||||||||||||||||| |||| |||||| |||||| |||||||  | ||||||||||||||||||||||| |||||||||||||||    
T  50060358 atctccagttactataatgtcgtccacatacaccaataacactgttact-ccccctgactcggagtgtttgacaaataaagtatggtctccttggctttg 50060260  T
Q  296 tttgaagctcaaacctaccataactttagtgaatctcccaaaccatg 342  Q
    |||||||| ||||| || |||||||||||||||||||||||||||||    
T  50060259 tttgaagcccaaacatatcataactttagtgaatctcccaaaccatg 50060213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 1533308 - 1533135
Alignment:
Q  1 tcaattggtatacttgcagacttttatgatgtctttccagtctcttgtagaagatcagtaatgtatttctgtcgagatatgaaaattcctttcttggagt 100  Q
    ||||||||  ||||||||  |||  ||| |||||| ||| ||||||| |||||||| ||||||||||| ||| ||||| |||||||| ||||||||||||    
T  1533308 tcaattggggtacttgcaagcttgcatgttgtcttgccaatctcttgcagaagatctgtaatgtatttatgttgagatgtgaaaatttctttcttggagt 1533209  T
Q  101 gagccacttcaattcccaataaatactttaattttcccaaggtcttgatctcaaactctttggctaagtgttgg 174  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| |||||||||||||    
T  1533208 gagccacttcaattcccaaaaaatactttaattttcccaaggtattgatatcaaactcttcggctaagtgttgg 1533135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 188 - 342
Target Start/End: Complemental strand, 1528494 - 1528341
Alignment:
Q  188 tcttcatcatcgcttgtcactataatgtcgtccacatataccagtaacacggttacttccccctgttttggagtgtttgacaaataaagtattgtctcct 287  Q
    |||||||||||   |||||||||||| || |||||||||||||| ||||| |||||| |||| ||||| ||||||||||| ||||||||||| |||||||    
T  1528494 tcttcatcatcatctgtcactataatctcatccacatataccagcaacactgttact-ccccttgtttcggagtgtttgataaataaagtatggtctcct 1528396  T
Q  288 tggctttgtttgaagctcaaacctaccataactttagtgaatctcccaaaccatg 342  Q
    ||||||||||||||||  ||| |||||||||||||  |||| || ||||||||||    
T  1528395 tggctttgtttgaagcctaaatctaccataactttgatgaacctaccaaaccatg 1528341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 302
Target Start/End: Original strand, 46145022 - 46145123
Alignment:
Q  200 cttgtcactataatgtcgtccacatataccagtaacacggttacttccccctgttttggagtgtttgacaaataaagtattgtctccttggctttgtttg 299  Q
    |||||||||||||| || |||||||| |||| |||||||||||| |||| |||  |  |||| ||||| ||||| || || | ||| |||||||||||||    
T  46145022 cttgtcactataatatcatccacatacaccaataacacggttac-tccctctgactcagagtatttgataaatagagcatggcctctttggctttgtttg 46145120  T
Q  300 aag 302  Q
    |||    
T  46145121 aag 46145123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 18046 - 17879
Alignment:
Q  1 tcaattggtatacttgcagacttttatgatgtctttccagtctcttgtagaagatcagtaatgtatttctgtcgagatatgaaaattcctttcttggagt 100  Q
    ||||||||| ||||||||| |||  |||  |  ||||||||||| || ||||||||||||||  |||| ||| | ||||||||||| ||||     ||||    
T  18046 tcaattggtgtacttgcaggcttgcatgcggcttttccagtctcctgcagaagatcagtaatacatttatgttgggatatgaaaatacctta----gagt 17951  T
Q  101 gagccacttcaattcccaataaatactttaattttcccaaggtcttgatctcaaactctttggctaagtgtt 172  Q
    |||||||||||||| | |  |||||||| |||||||||||||||||||||||||| || ||||| |||||||    
T  17950 gagccacttcaatttctagaaaatacttcaattttcccaaggtcttgatctcaaattcattggccaagtgtt 17879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 16985811 - 16985870
Alignment:
Q  283 ctccttggctttgtttgaagctcaaacctaccataactttagtgaatctcccaaaccatg 342  Q
    ||||| |||||||||| || | ||| | ||||||||||||||||||||||||||| ||||    
T  16985811 ctcctaggctttgtttaaatcccaagcataccataactttagtgaatctcccaaaacatg 16985870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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