View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6547_low_23 (Length: 296)
Name: NF6547_low_23
Description: NF6547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6547_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 24564581 - 24564837
Alignment:
| Q |
16 |
aatatgacacctgaaagcccggcattcccacacactacaatctacgactctacgtaaagtttgaataccttgttaatgaattaaaatgttagtattagag |
115 |
Q |
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| T |
24564581 |
aatatgacacctgaaagcccggcattcccacacactacaatctacgactctacgtaaagtttgaataccttgttaatgaattaaaatgttagtattagaa |
24564680 |
T |
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| Q |
116 |
gaaggataaaaatgtttataaagtaagttagggtaaaatccaatttatatagacctttttggaccacttattcttcaagttttgaccaacttagaagtgc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24564681 |
gaaggataaaaatgtttataaagtaagttagggtaaaatccaatttatatagacctttttggaccacttagtcttcaagttttgaccaacttagaagtgc |
24564780 |
T |
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| Q |
216 |
atctctaaagagattaatccagttggagttgaatatgaaacagaaagcatacatgag |
272 |
Q |
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| T |
24564781 |
atctctaaagagattaatccagttggagttgaatatgaaacagaaagcatacatgag |
24564837 |
T |
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